BAC Information

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BAC

Clone NameMSMg01-394D06
Chromosome11 (Build37)
Map Location 61,559,009 - 61,735,526
singlet/doubletdoublet
Overlap genePrpsap2, Ulk2, Akap10
Upstream geneTop3a, LOC100042517, Smcr8, Shmt1, LOC625958, LOC637900, Dhrs7b, Tmem11, Gtlf3b, Map2k3, Kcnj12, LOC668228, Tnfrsf13b, Usp22, LOC668239, Aldh3a1, Aldh3a2, 4933429E10Rik, 1300013J15Rik, LOC100042602, LOC626150, Zfp179, Mfap4, Mapk7, 3110043A19Rik, Eppb9, Epn2, Grap, Slc5a10, 2310040C09Rik
Downstream geneD630015H07, LOC626325, LOC100041558, Specc1, Adora2b, 2410012H22Rik, Ttc19, Ncor1, Pigl, Prr6, Ubb, Trpv2, 2410006H16Rik, BC046404, BC025076, Zfp287, LOC626482, LOC100042766, Zfp286, Trim16, Fbxw10, Fam18b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-394D06.T7 (MSMg01no394_d06.b1)MSMg01-394D06.TJ (MSMg01no394_d06.g1)
ACCAG495315AG495316
length769765
length of high quality
(start - end)
460 (49 - 508)312 (86 - 397)
definitionCHROMAT_FILE: MSMg01no394_d06.b1 PHD_FILE: MSMg01no394_d06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:39:30 2005CHROMAT_FILE: MSMg01no394_d06.g1 PHD_FILE: MSMg01no394_d06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:39:30 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,559,009 - 61,559,457)(61,735,217 - 61,735,526)
sequence
CTCCATTATCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGA
GGATCCGCGGAATTCCAGGAGAGCCAGGGCTACACAGAGAAACCCTGTCT
TGAAAAAAACAAACAAACGAATAAGCAAATCAACAACAAGCCCTTAAAGT
ACAGAAACAGCAGAAAATCTTAACAAAGAAATATTTCTACAAGTGTTTTT
ACAGCTGATTGTCTCTCCTACAATTTTCCTTAGCAGGGATGACAAAACCC
AACATAAGATACCAAGACCTCTTCACCCACACTGTGACATCTGAAATGAT
TAACAGAAAAAGGTACGAGAACATTTTAGAAGTAGTATTGTCCAAAAGAG
TAAGGAGCTGAACCTGTGTGGTCCATCCAAGCCTATAAGAGAAAGGAGAA
AGCGTCCAGAAGACTCAGTGAGCTAGCCTGTTTCCTCTGTCAAAGCTTGT
TAGTGTTTCAAAGGGGTTCAGTGGTTAATAAGTCAACTAGATAGGATTTA
CAGTCACCTAGAGGTGAGTCTGGGAGACACATGTGAGTGATCAGTGTCTG
TGATGACTATGAGGGTTATTCCTGAATACTCTGAAGCCAGAAGATTTATT
TGGCCGGGTCGTGTTGTTGTCCCCCCTTTACCCCCCCATCTCCTTACGCG
CATTGCCAATGCCCGCTTTACCTTCTGATTTCTAAGGCCAGCCTGGGCTT
CAAATTGGATTTTTCGTTCTTCCTCAAGCCTCTCTTAAAAAAACCTTTGT
CTCCAAATAATAAATAAAN
TTTTTTCCCTCAATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTTAAACTACCTTC
TTTAAGCCAGATGTGACTAAAGGTGAAAGTTCTAAGTGGAGGCTTGCCTG
GGAGAAGGAAAGGATTAGCACCCTAGGCCATCAGAACTGCAGTCTTCACA
CAGAACTGACACTAGTGTCCGGACTTTGGAAAGAAAGTCTTGGAACTTTC
TTTAGATTCTTCATTTTGCATAGTGAGGAGATTGGCTTCATTTTGTTTCC
CAGTAAGTTTCTAATTCTCTAAATTAAAATTGAGATTTAAAAACTTCATA
CTTGGTGGGTAAGATGAAGCATGCCTTTAATCACAGCACTCAGTATACAG
AGGCAGGCAAATCTCTTTGAATTTGAGGCCAACCTGGCCAATACAGTAAG
TTTTAAGACAGCGCAGGCTATATATTGAGATCATGCCTCAGACAACTACC
AGTAATAAGTTATGTCTGAATTAATTAACTTGCTTAATTATATTTGAAGG
AAAACAACCTTCCTGCTTGGTAATCTGCTAGTGGAATTCCATATCCCCTG
CTTTATCCGTACGGACTCGTATCTTTTGTACCAATCTACAGATGTTTTTT
AACCCTTCCTTTCTAGATGACCTCCTGCACATCCCCTTTTCCTAATATAT
CCCTGGCTACTACCCTTTATTCAATCCCGCTGTCTTCTCTCCTTCTCCTC
TTCCATTATTCCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no394_d06.b1 MSMg01no394_d06.b1 CHROMAT_FILE:
MSMg01no394_d06.b1 PHD_FILE: MSMg01no394_d06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:39:30 2005
         (460 letters)



>mm_chr11_61558798_61559657
          Length = 860

 Score =  861 bits (445), Expect = 0.0
 Identities = 448/449 (99%)
 Strand = Plus / Plus

                                                                       
Query: 12  gaattccaggagagccagggctacacagagaaaccctgtcttgaaaaaaacaaacaaacg 71
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 gaattccaggagagccagggctacacagagaaaccctgtcttgaaaaaaacaaacaaacg 271

                                                                       
Query: 72  aataagcaaatcaacaacaagcccttaaagtacagaaacagcagaaaatcttaacaaaga 131
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aataagcaaatcaacaacaagcccttaaagtacagaaacagcagaaaatcttaacaaaga 331

                                                                       
Query: 132 aatatttctacaagtgtttttacagctgattgtctctcctacaattttccttagcaggga 191
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 aatatttctacaagtgtttttacagctgattgtctctcctacaattttccttagcaggga 391

                                                                       
Query: 192 tgacaaaacccaacataagataccaagacctcttcacccacactgtgacatctgaaatga 251
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tgacaaaacccaacataagataccaagacctcttcacccacactgtgacatctgaaatga 451

                                                                       
Query: 252 ttaacagaaaaaggtacgagaacattttagaagtagtattgtccaaaagagtaaggagct 311
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 452 ttaacagaaaaaggtacgagaacattttagaagtagtgttgtccaaaagagtaaggagct 511

                                                                       
Query: 312 gaacctgtgtggtccatccaagcctataagagaaaggagaaagcgtccagaagactcagt 371
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 gaacctgtgtggtccatccaagcctataagagaaaggagaaagcgtccagaagactcagt 571

                                                                       
Query: 372 gagctagcctgtttcctctgtcaaagcttgttagtgtttcaaaggggttcagtggttaat 431
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 gagctagcctgtttcctctgtcaaagcttgttagtgtttcaaaggggttcagtggttaat 631

                                        
Query: 432 aagtcaactagataggatttacagtcacc 460
           |||||||||||||||||||||||||||||
Sbjct: 632 aagtcaactagataggatttacagtcacc 660


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 860
Length adjustment: 10
Effective length of query: 450
Effective length of database: 850
Effective search space:   382500
Effective search space used:   382500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no394_d06.g1 MSMg01no394_d06.g1 CHROMAT_FILE:
MSMg01no394_d06.g1 PHD_FILE: MSMg01no394_d06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:39:30 2005
         (312 letters)



>mm_chr11_61735017_61735728
          Length = 712

 Score =  592 bits (306), Expect = e-173
 Identities = 309/310 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atttaaactaccttctttaagccagatgtgactaaaggtgaaagttctaagtggaggctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 atttaaactaccttctttaagccagatgtgactaaaggtgaaagttctaagtggaggctt 451

                                                                       
Query: 61  gcctgggagaaggaaaggattagcaccctaggccatcagaactgcagtcttcacacagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 gcctgggagaaggaaaggattagcaccctaggccatcagaactgcagtcttcacacagaa 391

                                                                       
Query: 121 ctgacactagtgtccggactttggaaagaaagtcttggaactttctttagattcttcatt 180
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 ctgacactagtatccggactttggaaagaaagtcttggaactttctttagattcttcatt 331

                                                                       
Query: 181 ttgcatagtgaggagattggcttcattttgtttcccagtaagtttctaattctctaaatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 ttgcatagtgaggagattggcttcattttgtttcccagtaagtttctaattctctaaatt 271

                                                                       
Query: 241 aaaattgagatttaaaaacttcatacttggtgggtaagatgaagcatgcctttaatcaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 aaaattgagatttaaaaacttcatacttggtgggtaagatgaagcatgcctttaatcaca 211

                     
Query: 301 gcactcagta 310
           ||||||||||
Sbjct: 210 gcactcagta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 712
Length adjustment: 9
Effective length of query: 303
Effective length of database: 703
Effective search space:   213009
Effective search space used:   213009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)