BAC Information

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BAC

Clone NameMSMg01-394E14
Chromosome11 (Build37)
Map Location 105,196,039 - 105,196,248
singlet/doubletsinglet
Overlap geneMrc2
Upstream gene1700081L11Rik, Cdc27, Myl4, LOC666721, EG629959, Itgb3, LOC666739, LOC629960, LOC666749, LOC632784, LOC276809, LOC100041125, 4921510J17Rik, Mettl2, LOC666771, Tlk2, 1700052K11Rik
Downstream geneRnf190, EG666807, Tanc2, LOC667737, Cyb561, Ace, EG217246, Kcnh6, Wdr68, Ccdc44, Map3k3, Limd2, 2610019A05Rik, 2610204L23Rik, Ddx42, Ftsj3, Psmc5, Smarcd2, Tcam1, Gh, Cd79b, Scn4a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-394E14.T7 (MSMg01no394_e14.b1)MSMg01-394E14.TJ (MSMg01no394_e14.g1)
ACCAG495379AG495380
length905781
length of high quality
(start - end)
215 (80 - 294)41 (81 - 121)
definitionCHROMAT_FILE: MSMg01no394_e14.b1 PHD_FILE: MSMg01no394_e14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:39:37 2005CHROMAT_FILE: MSMg01no394_e14.g1 PHD_FILE: MSMg01no394_e14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:39:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTACCTTCCCCCCCAACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXGCGCGGAATTCCAGGATACCCAGGAATACACAGAGAAACCCTGTCT
CAAAAAGACCGAAAAAAAAAAAAAGAAAGAAAGAAAGAAAAAGAATCAAC
ATTAAGGAAAAACTAGCATCCAACTTGGACACCAGAGCTGAGAAGCTACG
GACAGATGGAGGACGAAGAGAGGGCTGGGTGGACCTCGGGACTCTGCAGA
GTGGAGTCTGGTGGGATGCTCCTGGGGAGGGAGGGAGTGTGNNTCCNCCC
CCCNCCCNTCCCCCCCCCCCCCCTCCTTTTTTTTCTCTCCNCCNNTCCCC
TCCCCCTCCGCCCCCCCCCCTTTCTTCCCCCCTTTCTCCTTTCCTTCGTT
CTTTCCTTCTCCCCCCCCTCTTTTTGTCTTCCCCCCCTCCCCCCCTCTCC
TTCTTTCCTTCCCTCCTTTCTCCCTCCCCTCCGCTTTTCCCCTCCTTCCT
TTTCCTCCCCCCCCCTCTCTTCTTACCTTTTTCTATCTCCGCTCCCTCCA
CACACTATTCTCCCATTCCCCTTCCGCGTTTATTCTTCTCCTCCTTTTCC
CCCTTTCCTCTTCTCCTTTCTTTTTTCACATCTCTCTCTCCCCTTCCTTC
CCTATTTCCCCCCCCCCTCTTCCCCCGTATCTTCCCCCCTTATTCCATTA
ACCCTCCCGTTCCTCCTTCCTATTTCCTTTCCCCTTCCACTGACTACCCT
TTCTCCTCTTCTACTCTACCCCATTTCCTCCTTCTCCCCCCTCCCCCCCC
TCTTTCCCCCCCGTCCCCACTCTCTTCCCTATTTCCTCCTCCCTCCCTAC
TCTACCCTCCCCCATCCTATCCCCTCCACCTTTTCTCTCCTCCAACTTCC
TTCCN
CCTCCTTTCCTATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTGCTGGGAGGACAAAAGC
CCCAGCAGGACTGGGGGATGGGCTGGGGTGGGGTGNNANNNNNNNNCCNN
NNTNNTNNNTNNNNNNNTGGGGGGGTNTCTTCTCCTCCCTCCCTCCCTCC
TCTCCCCCCCCCTCCCCTTCCCCCCCCCCCTCTCCCCTCTCCCCCCCCCC
CCCTCTTCCCTTCCCCCCCTCTCTCCTCCCTCTCCTCCCCCCCCCCCCTT
TCTCCCCCCCTCCCCCCCTCTCCCCCCCCCTCCTTCCTCCCTCCCTTCTC
CCTCCTTTTCCCCCCCCTCCCCTCTTTTTCTTCTTCCCCCCCCCCCCCCC
CCCCTCCCCTTTTCCCCCCCTCTTCCCTCTTCCCCTCTTCCCTCCTCCCT
CTTTTCCCCCCTTCCCCTCTCCCCTCCCCCCCCCCCCCCCTTCTCCTCCC
TCTCCCCCCTCTCCCCCTACCTCCCCTCCCTTCCCTTTCTCCCCTTTCCC
CCCCCTCCTCCCCCCCCTCTTTCCCTTCCCCCTCTCCCCCTTTCCCCTTC
CCCCTCCCCTCCCCCCTTCCTCTCCTTTTTCCCCTTCCTCCCCACCCCCC
CCCTTTCCCCCCCCCTCCTTCTCCCTCCCCCTTACCCCCACCCCCCCTCT
TCCCTTCCTCCCCCCTTCCCACCCACCACTCCTTTATCCTCCCCCCTCCC
CCCCCTCCTTCCCCCTCCCCTCCCTCCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no394_e14.b1 MSMg01no394_e14.b1 CHROMAT_FILE:
MSMg01no394_e14.b1 PHD_FILE: MSMg01no394_e14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:39:37 2005
         (215 letters)



>mm_chr11_105195773_105196386
          Length = 614

 Score =  379 bits (196), Expect = e-110
 Identities = 208/212 (98%), Gaps = 2/212 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atacacagagaaaccctgtctcaaaaagaccgaaaaaaaaaaaaagaaagaaagaaagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 476 atacacagagaaaccctgtctcaaaaagaccgaaaaaaaaaaaaa-aaagaaagaaagaa 418

                                                                       
Query: 61  aaagaatcaacattaaggaaaaactagcatccaacttggacaccagagctgagaagctac 120
           |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 417 aaagaatcaacatt-aggaaaaaatagcatccaacttggacaccagagctgagaagctac 359

                                                                       
Query: 121 ggacagatggaggacgaagagagggctgggtggacctcgggactctgcagagtggagtct 180
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ggacagatggaggacaaagagagggctgggtggacctcgggactctgcagagtggagtct 299

                                           
Query: 181 ggtgggatgctcctggggagggagggagtgtg 212
           ||||||||||||||||||||||||||||||||
Sbjct: 298 ggtgggatgctcctggggagggagggagtgtg 267


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 215
Length of database: 614
Length adjustment: 9
Effective length of query: 206
Effective length of database: 605
Effective search space:   124630
Effective search space used:   124630
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)