BAC Information

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BAC

Clone NameMSMg01-394G06
Chromosome11 (Build37)
Map Location 69,123,999 - 69,124,366
singlet/doubletsinglet
Overlap geneCntrob
Upstream geneNtn1, Pik3r5, BB220380, BC024997, Ccdc42, Myh10, Ndel1, 9930039A11Rik, Rpl26, Odf4, Arhgef15, Slc25a35, 2400006H24Rik, Pfas, 1500010J02Rik, Aurkb, 2310047M10Rik, Tmem107, Vamp2, Per1, Hes7, Aloxe3, Alox12b, Alox8, Gucy2e
Downstream geneTrappc1, Kcnab3, A030009H04Rik, Chd3, Cyb5d1, Lsmd1, Tmem88, Jmjd3, Dnahc2, Efnb3, Wdr79, LOC100043030, Trp53, Atp1b2, Shbg, Sat2, LOC382532, Fxr2, Sox15, Mpdu1, Cd68, Eif4a1, Senp3, Tnfsf12-tnfsf13, Tnfsf13, Tnfsf12, LOC100041994, Polr2a, Amac1, Zbtb4, Chrnb1, Fgf11, Tmem102, 4933402P03Rik, 1700095G12Rik, Nlgn2, 1810027O10Rik, Plscr3, Tnk1, LOC432576, Kctd11, Centb1, 2810408A11Rik, 0610025P10Rik, Gps2, Eif5a, Ybx2, Slc2a4, LOC668442, Cldn7, Rai12, Dullard, Gabarap, Phf23, Dvl2, Acadvl, Dlg4, Asgr1, Asgr2, Mgl2, Mgl1, Slc16a11, Slc16a13, Bcl6b, 0610010K14Rik, D11Bwg0434e, Alox12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-394G06.T7 (MSMg01no394_g06.b1)MSMg01-394G06.TJ (MSMg01no394_g06.g1)
ACCAG495458AG495459
length794800
length of high quality
(start - end)		368 (71 - 438)229 (78 - 306)
definitionCHROMAT_FILE: MSMg01no394_g06.b1 PHD_FILE: MSMg01no394_g06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:39:45 2005CHROMAT_FILE: MSMg01no394_g06.g1 PHD_FILE: MSMg01no394_g06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:39:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTTCTCTAACACCGCGGCGCTAAAAGGATCACTATTCATACAGGATCCG
NGGAATTCACAGATTCCCTCTTGTCTCTGCCTCCTGAGTGCTGGGACTAA
AGGCATGTGACACCATGCCTGGTGGAAGTGCTTTCTATTGTGTCATTTTC
AAATGGATGTAGATTATACTCCTATAGTCCCGGCTTGGGTGGCTGAGGCA
GGAGAATTGCCAGTTTGAGATGAGCCTGGGCTATGTAATGAGATTCTGTC
TCATCCAAACCAACCCAAAGCGAAGAGCTGGTCTGTTGCTTTCCTGTAAC
CCCTCACATCAGTCTCTGCTTCTGTTTCCGTCCTGTGGCCTCAGCTTTGT
TCTCACTGTCGCTGTGCTGTGGGGTTGCAGCCGTCTGTCTTCCTGACCCG
AACCCTCAGGAATGAGGCTCCCTAATGGTGAGGTGCTGTCACTCCTGGAC
TGGGACACAGAACTACTGTTTCCTTTGTCCTTTAATCACCTCCCCGAAAT
AGCCTTGGGTTGCGCTGGCTTCCCTCATTTTCCTTTACCTCCATTCNCTC
TGTCTTCTTTTTTCTGATACTGTCTCTTGCTTTCAAAACGTTTCCCCCTT
GTCCCCATTTCGTATCGCCCCCCTCCTTGGTCCTTTATCTTGCCTACTCC
CTTTTCCTTTTACCTTCGCTTTATCCTTCCCCCCTTCCTCGCTCTTTCTC
CCCTCCCTCCTTTTTCCCTTTTACTCCCCCATCCATCTTCTTCCCTCCCC
CATCCTTACCCTCCCCTTTTTTCTCCCCTCAATCTTTCTATCAC

TTTCCCGATGATACTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXACTATGTAGACCAGGCTGGCCTT
GAACTTGAACTCACAGAGATTTACTTGCTTCTGCCTGGGATTAATGGCCT
GATCTAACATGCCCTGCCTAGCATAACCTTAATTCTTACATAGTCTCTGG
ACAATTGCCCAGAGGGTAAAATGACCCACTCACTCAGACATCATTAGTCT
TACTTTATTATTGTTATTATTATATTTTTTTTAAATGTTGTGTGTGTGTG
TCTATGTGAGCGTATGTCATGTTTTTTCTGGTGCTCACAGAGTTCATAAG
ATGTCATCAGCTTGTCTATAGTCAGTTGTGAGCTGCCCCTTGTGGATAAC
GGCATTGAACCCTGTCCCCTTCGAACACCCTAGCGCTCTCTTAAATATTG
AGCTCATCTCACTTTCCCCCTTTACTGTTTCCTTATTTATCACCTTCGCC
TACCTCCTACCCAACATATTCTTCTATTAATATTCTCTATCCTCTTCCTT
TCCTTCACCATATCCGCTTTCCTCGTCCCCCTTTTCTTACCCTACTATTT
TTCCTTCTCCTTCCTCCTTCTTTCTTTCTTTTTCTTCTATTTACCACCTC
CACCACATTTCCCTCCCTTATATTTCTTCCTCCTTACTCCCATCCCCGTA
ATTATACTTCTTCCTCCCAATCCAGACTGATCCACTTCCTTTTAAACTTC
TCTCCTCTACATCTCAATAATAATCTCCTCTTCTCCTTCCATTTCTCATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no394_g06.b1 MSMg01no394_g06.b1 CHROMAT_FILE:
MSMg01no394_g06.b1 PHD_FILE: MSMg01no394_g06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:39:45 2005
         (368 letters)



>mm_chr11_69123615_69124382
          Length = 768

 Score =  658 bits (340), Expect = 0.0
 Identities = 361/368 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgtctctgcctcctgagtgctgggactaaaggcatgtgacaccatgcctggtggaagtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 ttgtctctgcctcctgagtgctgggactaaaggcatgtgacaccatgcctggtggaagtg 693

                                                                       
Query: 61  ctttctattgtgtcattttcaaatggatgtagattatactcctatagtcccggcttgggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 ctttctattgtgtcattttcaaatggatgtagattatactcctatagtcccggcttgggt 633

                                                                       
Query: 121 ggctgaggcaggagaattgccagtttgagatgagcctgggctatgtaatgagattctgtc 180
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 632 ggctgaggcaggagaattgcaagtttgagatgagcctgggctatgtaatgagattctgtc 573

                                                                       
Query: 181 tcatccaaaccaacccaaagcgaagagctggtctgttgctttcctgtaacccctcacatc 240
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 tcaaccaaaccaacccaaagcgaagagctggtctgttgctttcctgtaacccctcacatc 513

                                                                       
Query: 241 agtctctgcttctgtttccgtcctgtggcctcagctttgttctcactgtcgctgtgctgt 300
           ||||||||||||||   || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 agtctctgcttctggggccatcctgtggcctcagctttgttctcactgtcgctgtgctgt 453

                                                                       
Query: 301 ggggttgcagccgtctgtcttcctgacccgaaccctcaggaatgaggctccctaatggtg 360
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 452 ggggttgcagccgtctgtcttcctgacccgaacccacaggaatgaggctccctaatggtg 393

                   
Query: 361 aggtgctg 368
           ||||||||
Sbjct: 392 aggtgctg 385


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 768
Length adjustment: 9
Effective length of query: 359
Effective length of database: 759
Effective search space:   272481
Effective search space used:   272481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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