BAC Information

Click to search

BAC

Clone NameMSMg01-395D02
Chromosome11 (Build37)
Map Location 11,859,844 - 11,860,271
singlet/doubletsinglet
Overlap geneGrb10
Upstream geneVwc2, Zpbp, LOC625132, EG432534, 4930415F15Rik, Ikzf1, Fignl1, Ddc
Downstream geneCobl, LOC627244
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-395D02.T7 (MSMg01no395_d02.b1)MSMg01-395D02.TJ (MSMg01no395_d02.g1)
ACCAG496069AG496070
length743741
length of high quality
(start - end)
480 (52 - 531)430 (82 - 511)
definitionCHROMAT_FILE: MSMg01no395_d02.b1 PHD_FILE: MSMg01no395_d02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:06:57 2005CHROMAT_FILE: MSMg01no395_d02.g1 PHD_FILE: MSMg01no395_d02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:06:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNAATCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTCATAATATCTATGTTAGTTACTTTTCTATATAACTAAT
ATATTAATATGTATGTGTATATATATAACTAATATCATAGTGATAAAACA
CCATGACCAAAAGCAATTTACAGAATCAAGTGTTTATTTTGGCTATGTTT
CCAGAGGCAAAGTCCATATCAGTAGGCGAGGCATGGCAGTAGGGAACCAT
AGCAGAAAGCTGAGAGACCACATCTTCAAACACATGCCAGAAGCAAAGAA
ACAGTACTGGGATTGAAGCAACACTATACCCCCCCACTGACATCCTTTCT
CCAGTAAGGCTATATCTCTAAAATCTCCCCAGACAGTGCCACCAACTGGG
GAATAAGTGTAGATATAAGTAGCCAAGACTTTGGGGAGCATTCCATAGTC
AATTCACCATAATGGCCTCTATCTAAATTTTCTGTTGTTAATGTTGTAAT
ATATTTTCTATATTGCATTCTATTTTTGAGACATTCGAGAATACATATCT
GCTTTCCCCAAATGCCATACAGTGCGTTTCATAAAACCCACAACCTCCGG
TGAATAACCTATGTACCTACAACCACACCTGATAAACATACACCCCCCCC
AAAATTTGCAATATTAATACCCGGGTGCCCCATCCTCCAGGCTCTCTCTT
ATGCGGCCCCCTATAGGAACACGGTTCCTCTTCTCTCTCCCAG
CCTCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGTGGCCCACATGACTG
TCTAATTCATGGACCCCGCTTGGACAGAGCTGTACCCCATTAGGTCTCTT
ACTCTGTAGAGGGTACACTTTATTTCCTGGGACTTTTCTATGGTCTAAAA
AGTCCTGAAGAGCTCTGGCTGTTCAGTAGAACATATCCAGGACCTGGTTC
AGGGCAGGCAATACCACTGAAGAGATGCTGAGATCCCTTTGGGTCACCAG
GTCTGCTGTGCCCCACTCCTGGAGATGTCTATTGGGACCACACACTCAAG
GCTTCCTGATCTCCATCTTCCTTCCTTTTTCTGCTCTTCCAGCGGCCTCC
TCCATCCTCGTTATACCTTGCCTTTACTATTTAAAAAACTTTATTCCTTT
TACTGGGGAGCATGTTTAGAAACCAAAAACAGAAAGCGCCTACTGTCTTA
CTATTACAGTTTGAGCTGAGTGTCTGCCAAGGTCCATGTGTTCGGGACTT
GGTCCCTAGCCTGGTGAAGTTTGGAACAATGGGAACTTTTGGGGGGTCTT
CGCCCCTGTGGGCCCCTGCGGGTCGCCCCTGCTTCCCCTGCCTCCCCGTT
TAACTTTGCCTTCCGCCTTCCCTCCCTTCCTCCCTTTCCCCTTTTTCTCC
GTCCCCTTTCTTCTCCCTTTTTTCCCCTTCCTCTTCTTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no395_d02.g1 MSMg01no395_d02.g1 CHROMAT_FILE:
MSMg01no395_d02.g1 PHD_FILE: MSMg01no395_d02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:06:57 2005
         (430 letters)



>mm_chr11_11859644_11860471
          Length = 828

 Score =  774 bits (400), Expect = 0.0
 Identities = 422/434 (97%), Gaps = 10/434 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcagtggcccacatgactgtctaattcatggaccccgcttggacagagctgtaccccatt 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 tcagtggcccacatgactgtctaattcatgggccccgcttggacagagctgtaccccatt 260

                                                                       
Query: 61  aggtctcttactctgtagagggtacactttatttcctgggacttttctatggtctaaaaa 120
           ||||||||||||||||||   ||   ||||||||||||||||||||||||||||||||||
Sbjct: 261 aggtctcttactctgtag---gt---ctttatttcctgggacttttctatggtctaaaaa 314

                                                                       
Query: 121 gtcctgaagagctctggctgttcagtagaacatatccaggacctggttcagggcaggcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 gtcctgaagagctctggctgttcagtagaacatatccaggacctggttcagggcaggcaa 374

                                                                       
Query: 181 taccactgaagagatgctgagatccctttgggtcaccaggtctgctgtgccccactcctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 taccactgaagagatgctgagatccctttgggtcaccaggtctgctgtgccccactcctg 434

                                                                       
Query: 241 gagatgtctattgggaccacacactcaaggcttcctgatctccatcttccttcctttttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 gagatgtctattgggaccacacactcaaggcttcctgatctccatcttccttcctttttc 494

                                                                       
Query: 301 tgctcttccagcggcctcctccatcctcgttataccttgcctttactatttaaaaaactt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 tgctcttccagcggcctcctccatcctcgttataccttgcctttactatttaaaaaactt 554

                                                                       
Query: 361 tattccttttactggggagcatgtttagaaaccaaaaacaga----aagcgcctactgtc 416
           ||||||||||||||||||||||||||||||||||||||||||    ||| ||||||||||
Sbjct: 555 tattccttttactggggagcatgtttagaaaccaaaaacagagagaaagtgcctactgtc 614

                         
Query: 417 ttactattacagtt 430
           ||||||||||||||
Sbjct: 615 ttactattacagtt 628


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 828
Length adjustment: 9
Effective length of query: 421
Effective length of database: 819
Effective search space:   344799
Effective search space used:   344799
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)