Query= MSMg01no395_m03.b1 MSMg01no395_m03.b1 CHROMAT_FILE:
MSMg01no395_m03.b1 PHD_FILE: MSMg01no395_m03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:07:42 2005
(277 letters)
>mm_chr11_73199050_73199726
Length = 677
Score = 514 bits (266), Expect = e-150
Identities = 272/274 (99%), Gaps = 2/274 (0%)
Strand = Plus / Minus
Query: 5 gaattccattag-attctgatgggtgttgcattgagtctatagattgcttttgataatat 63
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 gaattccattagaatt-tgatgggtgttgcattgagtctatagattgcttttgataatat 592
Query: 64 agccatggtcatgatattaatcctacgagtccatgagcaatggaggtctctctattttta 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 agccatggtcatgatattaatcctacgagtccatgagcaatggaggtctctctattttta 532
Query: 124 gtatcctcggttccttttttcagtgtcttaacaatttcattgtacaagtctttctgagga 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 gtatcctcggttccttttttcagtgtcttaacaatttcattgtacaagtctttctgagga 472
Query: 184 tatcttattccattggcctacgtcatctagagcaaatgttcccatcattcattctttttc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 tatcttattccattggcctacgtcatctagagcaaatgttcccatcattcattctttttc 412
Query: 244 taaatgtattagcataccaatagtctcctaacct 277
||||||||||||||||||||||||||||||||||
Sbjct: 411 taaatgtattagcataccaatagtctcctaacct 378
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 677
Length adjustment: 9
Effective length of query: 268
Effective length of database: 668
Effective search space: 179024
Effective search space used: 179024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no395_m03.g1 MSMg01no395_m03.g1 CHROMAT_FILE:
MSMg01no395_m03.g1 PHD_FILE: MSMg01no395_m03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:07:42 2005
(245 letters)
>mm_chr11_73092198_73092842
Length = 645
Score = 387 bits (200), Expect = e-112
Identities = 238/262 (90%), Gaps = 19/262 (7%)
Strand = Plus / Plus
Query: 1 acaatgccttctggtcttagcgcaaacctggccaaggaagaacagaggcagaagaagaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acaatgccttctggtcttagcgcaaacctggccaaggaagaacagaggcagaagaagaag 260
Query: 61 cgactgaagaagcgcattttcacggctgtgtccgagggatgcgtggaggagctgcgggaa 120
||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||
Sbjct: 261 cgactgaagaagcgcatcttcgcggctgtgtccgagggctgcgtggaggagctgcgggaa 320
Query: 121 ctcctacaggatctgcaggacctctgcaggaggcgccgcggcctggatgtgcctggtcag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctcctacaggatctgcaggacctctgcaggaggcgccgcggcctggatgtgcctggtcag 380
Query: 181 tgcc------tggc-------------cccagggaccatggttgggttggcttggcccct 221
|||| |||| ||||||||||||||||||||||||||| ||||
Sbjct: 381 tgcccgaccctggcataaagtgcaggccccagggaccatggttgggttggcttgaaccct 440
Query: 222 gctccatctcttgtggggctgg 243
||||||||||||||||||||||
Sbjct: 441 gctccatctcttgtggggctgg 462
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space: 150096
Effective search space used: 150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
