BAC Information

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BAC

Clone NameMSMg01-395M19
Chromosome11 (Build37)
Map Location 12,777,844 - 12,778,315
singlet/doubletsinglet
Overlap genenone
Upstream geneDdc, Grb10, Cobl
Downstream geneLOC627244
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-395M19.T7 (MSMg01no395_m19.b1)MSMg01-395M19.TJ (MSMg01no395_m19.g1)
ACCAG496528AG496529
length795781
length of high quality
(start - end)
480 (42 - 521)406 (74 - 479)
definitionCHROMAT_FILE: MSMg01no395_m19.b1 PHD_FILE: MSMg01no395_m19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:45 2005CHROMAT_FILE: MSMg01no395_m19.g1 PHD_FILE: MSMg01no395_m19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAGATCCGCGGAATT
CTTTTTTTTCCCCTGAAATTTCTATAGAGGTGCACTGCTTGTATTTATTT
TTGAAATGTATGCTTTTCTAGAAGTGAGGAGAAGCTACGTGTTCCTGTCT
TAGTAAGGGTTTTACCACTGTGAACAGACACCATGACCAAGGCTAGTCTT
ATAAGGACAACATTTAATTGGGGCTGGCTTACAGGTTCAGAGGTTAAGTC
CATTATCATCAAGGCAAGAATACAGTAGCATCCAGTCAGGCATGGTGCAG
AAGGACCTGAGAGTTCTTTATTTTTATCTGTAGACTGCTAGCTGAAGACT
CATTTCCAGCCACTGGCCTAAGCATATACAAACCATTACAATTCCTATTT
CAGAAGAACTTTTTAAATATGTCTAAATCATTTTAAAATTTTAAACAAAT
ATTCTCAAAACACAAATTTAAGAAACTACTGCTGTGATCACACAGATCAA
AGTGAGCCTGTACTCAGAACATAGATGGAAGTATCAAATAACATTTCTCA
TGAAACATGTGTATCATCTTCTTTCTCCATACTTTGGAAGCAAAGGCCGG
AGGATTGCTGTATTATCAATATTAGTCAGGCAGGGAGCTTGGGAGGGAGA
CCTCCTTGGGGTTTGGGTTTCTTCAAAAACAATCCTGGAAGGTGGGATGT
GGAACAACAAAATTACACATCTTTTGGGTAAAGTCTTAACCCAACCATTT
TTTTGGGTGAATTCCTTCTTTCGGCCTCCTTTTTTTTCTATATTN
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTACCTATAAAATATTGTTCAGGGAGAT
GCCAAAGATTTCCAAACCACACAGTCTTTTGTTACTTATCTTGATTCCCA
AAAGAACTACATGGTAAATCTTATAGAAAAGAGATATTACACAGCAGTTT
CATGATATATAGAAATAAAGCTGGAACTCAGCTAGAAGCTTCTTTCCTGT
TGGCTATTTTACAGTCCAGGAATATGTTGCTCAGGCTACTGAGAGAGAAA
AGGCAGTGATGGCCTTACCTATTTTGAACTTTATAAACCAACCTGTCCAA
AACCTATGCACATATGTGCAATAATGACACTATTGTTAAACTATGCACTC
TCTTGTTGGATTAAGGTGCACTTTATTAGAGGAAATCCATAGCTATTATG
GTAATTCTGGTGAAAAAGTCAGTGATGTGTGAGGGATTAGAGGCCTTAGC
GAAGAACTGACTACCATTGTTTAGTAAAATTATGTAATATCCAACTGCCT
TCTCATATTTATCTTTACACCTATAGATTGACATTATATCCCTTCCTTAA
TTGAAAATCCCCTTTCTAATAAAAAGTACCCAGGGATGGTTTTTAACTTA
TCACGGGTTTTCCATATAGCAAAGAAACGGCCTCCCTATTAAAAATTTAT
ACCGGATTCCTCCAGTTAAGCGCTCTTCCCCTCAATGGGCCCAACTTTTA
TACACTTGCTCGCTATTCCCTTACACATTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no395_m19.b1 MSMg01no395_m19.b1 CHROMAT_FILE:
MSMg01no395_m19.b1 PHD_FILE: MSMg01no395_m19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:07:45 2005
         (480 letters)



>mm_chr11_12777636_12778515
          Length = 880

 Score =  891 bits (461), Expect = 0.0
 Identities = 470/473 (99%), Gaps = 1/473 (0%)
 Strand = Plus / Plus

                                                                       
Query: 8   ttcttttttttcccctgaaatttctatagaggtgcactgcttgtatttatttttgaaatg 67
           ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 ttctttttttt-ccatgaaatttctatagaggtgcactgcttgtatttatttttgaaatg 267

                                                                       
Query: 68  tatgcttttctagaagtgaggagaagctacgtgttcctgtcttagtaagggttttaccac 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 tatgcttttctagaagtgaggagaagctacgtgttcctgtcttagtaagggttttaccac 327

                                                                       
Query: 128 tgtgaacagacaccatgaccaaggctagtcttataaggacaacatttaattggggctggc 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 tgtgaacagacaccatgaccaaggctagtcttataaggacaacatttaattggggctggc 387

                                                                       
Query: 188 ttacaggttcagaggttaagtccattatcatcaaggcaagaatacagtagcatccagtca 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 ttacaggttcagaggttaagtccattatcatcaaggcaagaatacagtagcatccagtca 447

                                                                       
Query: 248 ggcatggtgcagaaggacctgagagttctttatttttatctgtagactgctagctgaaga 307
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 448 ggcatggtgcagaaggacctgagagttcttcatttttatctgtagactgctagctgaaga 507

                                                                       
Query: 308 ctcatttccagccactggcctaagcatatacaaaccattacaattcctatttcagaagaa 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 ctcatttccagccactggcctaagcatatacaaaccattacaattcctatttcagaagaa 567

                                                                       
Query: 368 ctttttaaatatgtctaaatcattttaaaattttaaacaaatattctcaaaacacaaatt 427
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 ctttttaaatatgtctaaatcattttaaaattttaaacaaatattctcaaaacacaaatt 627

                                                                
Query: 428 taagaaactactgctgtgatcacacagatcaaagtgagcctgtactcagaaca 480
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 taagaaactactgctgtgatcacacagatcaaagtgagcctgtactcagaaca 680


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space:   408900
Effective search space used:   408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)