MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-395P19
Chromosome	11 (Build37)
Map Location	89,582,030 - 89,582,524
singlet/doublet	singlet
Overlap gene	none
Upstream gene	Akap1, Scpep1, OTTMUSG00000001305, 2210409E12Rik, Coil, LOC100039051, Trim25, Dgke, A930013B10Rik, Gm525, LOC100039114, Nog, LOC100039047, 4932411E22Rik, Ankfn1
Downstream gene	Pctp, Tmem100, LOC100039104, Mmd, Hlf, Stxbp4, LOC100039267, Cox11, Tom1l1
Link	Open Mouse BAC browser

Click to get alignment info.

name	Akap1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11640 MGI:104729
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Scpep1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74617 MGI:1921867
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	OTTMUSG00000001305 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:217066 MGI:3651308
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA pseudo : _no_value

name	2210409E12Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72381 MGI:1919631
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA pseudo : _no_value

name	Coil (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12812 MGI:104842
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100039051 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039051
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Trim25 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:217069 MGI:102749
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Dgke (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56077 MGI:1889276
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	A930013B10Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:414094 MGI:3041185
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 ESTs

name	Gm525 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:217071 MGI:2685371
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100039114 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039114
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Nog (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18121 MGI:104327
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100039047 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039047
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 1 Protein

name	4932411E22Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:214604 MGI:3045332
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ankfn1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:382543 MGI:2686021
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Pctp (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18559 MGI:107375
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tmem100 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67888 MGI:1915138
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100039104 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039104
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins pseudo : _no_value

name	Mmd (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67468 MGI:1914718
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Hlf (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:217082 MGI:96108
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Stxbp4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20913 MGI:1342296
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100039267 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039267
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs

name	Cox11 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69802 MGI:1917052
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tom1l1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71943 MGI:1919193
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Akap1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:110347476 GeneID:11640 MGI:104729
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : A kinase (PRKA) anchor protein 1 transcript_id : NM_001042541.1

name	Akap1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:110347488 GeneID:11640 MGI:104729
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : A kinase (PRKA) anchor protein 1 transcript_id : NM_009648.2

name	Scpep1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31982616 GeneID:74617 MGI:1921867
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : serine carboxypeptidase 1 transcript_id : NM_029023.2

name	Coil (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:134053928 GeneID:12812 MGI:104842
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : coilin transcript_id : NM_016706.2

name	LOC100039051 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149262372 GeneID:100039051
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100039051 transcript_id : XM_001472257.1

name	Trim25 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:46849790 GeneID:217069 MGI:102749
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tripartite motif protein 25 transcript_id : NM_009546.1

name	Dgke (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:126432551 GeneID:56077 MGI:1889276
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : diacylglycerol kinase, epsilon transcript_id : NM_019505.3

name	Gm525 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:126366077 GeneID:217071 MGI:2685371
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : gene model 525, (NCBI) transcript_id : NM_001033266.2

name	LOC100039114 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149262374 GeneID:100039114
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100039114 transcript_id : XM_001472509.1

name	Nog (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:7110674 GeneID:18121 MGI:104327
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : noggin transcript_id : NM_008711.1

name	LOC100039047 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149262370 GeneID:100039047
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 1 Protein product : hypothetical protein LOC100039047 transcript_id : XM_001472161.1

name	4932411E22Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803578 GeneID:214604 MGI:3045332
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4932411E22 gene transcript_id : NM_172534.2

name	Ankfn1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124286855 GeneID:382543 MGI:2686021
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ankyrin-repeat and fibronectin type III domain containing 1 transcript_id : NM_001080933.1

name	Pctp (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:117320551 GeneID:18559 MGI:107375
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : phosphatidylcholine transfer protein transcript_id : NM_008796.2

name	Tmem100 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142353421 GeneID:67888 MGI:1915138
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transmembrane protein 100 transcript_id : NM_026433.2

name	Mmd (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31982654 GeneID:67468 MGI:1914718
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : monocyte to macrophage differentiation-associated transcript_id : NM_026178.2

name	Hlf (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124487342 GeneID:217082 MGI:96108
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : hepatic leukemia factor transcript_id : NM_172563.3

name	Stxbp4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6755691 GeneID:20913 MGI:1342296
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : syntaxin binding protein 4 transcript_id : NM_011505.1

name	LOC100039267 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149262376 GeneID:100039267
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs product : hypothetical protein LOC100039267 transcript_id : XM_001472756.1

name	Cox11 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:110625799 GeneID:69802 MGI:1917052
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : COX11 homolog, cytochrome c oxidase assembly protein (yeast) transcript_id : NM_199008.2

name	Tom1l1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803263 GeneID:71943 MGI:1919193
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : target of myb1-like 1 (chicken) transcript_id : NM_028011.2

name	Akap1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110347477 GeneID:11640 MGI:104729
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005739 - mitochondrion [Evidence IEA]; GO:0019867 - outer membrane [Evidence IEA] GO_function : GO:0016301 - kinase activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : A kinase anchor protein product : A-kinase anchor protein 1 protein_id : NP_001036006.1

name	Akap1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110347489 CCDS:CCDS25229.1 GeneID:11640 MGI:104729
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005739 - mitochondrion [Evidence IEA]; GO:0019867 - outer membrane [Evidence IEA] GO_function : GO:0016301 - kinase activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : A kinase anchor protein product : A-kinase anchor protein 1 protein_id : NP_033778.2

name	Scpep1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31982617 CCDS:CCDS25230.1 GeneID:74617 MGI:1921867
definition	GO_function : GO:0004180 - carboxypeptidase activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA] codon_start : 1 exception : mismatches in translation note : retinoid-inducible serine caroboxypetidase; retinoid-inducible serine caroboxypeptidase; serine caroboxypeptidase 1 product : serine carboxypeptidase 1 protein_id : NP_083299.2

name	Coil (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:134053929 GeneID:12812 MGI:104842
definition	GO_component : GO:0015030 - Cajal body [Evidence IDA]; GO:0001674 - female germ cell nucleus [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 note : nuclear phosphoprotein of Cajal body; p80 Coilin product : coilin protein_id : NP_057915.2

name	LOC100039051 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149262373 GeneID:100039051
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001472307.1

name	Trim25 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:46849791 GeneID:217069 MGI:102749
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 exception : mismatches in translation note : estrogen-responsive finger protein; zinc finger protein 147 product : tripartite motif protein 25 protein_id : NP_033572.1

name	Dgke (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9506541 CCDS:CCDS25234.1 GeneID:56077 MGI:1889276
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0019992 - diacylglycerol binding [Evidence IEA]; GO:0004143 - diacylglycerol kinase activity [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0007242 - intracellular signaling cascade [Evidence IEA]; GO:0007205 - protein kinase C activation [Evidence IEA] codon_start : 1 product : diacylglycerol kinase, epsilon protein_id : NP_062378.1

name	Gm525 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85701760 GeneID:217071 MGI:2685371
definition	codon_start : 1 note : novel transcript product : hypothetical protein LOC217071 protein_id : NP_001028438.1

name	LOC100039114 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149262375 GeneID:100039114
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001472559.1

name	Nog (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7110675 CCDS:CCDS25236.1 GeneID:18121 MGI:104327
definition	GO_component : GO:0005615 - extracellular space [Evidence IDA] GO_process : GO:0030509 - BMP signaling pathway [Evidence IDA]; GO:0007420 - brain development [Evidence IMP]; GO:0051216 - cartilage development [Evidence IEA]; GO:0030154 - cell differentiation [Evidence IEA]; GO:0007417 - central nervous system development [Evidence IMP]; GO:0007275 - development [Evidence IEA]; GO:0045596 - negative regulation of cell differentiation [Evidence IEA]; GO:0007389 - pattern specification [Evidence IMP]; GO:0001501 - skeletal development [Evidence IMP]; GO:0001657 - ureteric bud development [Evidence IDA] codon_start : 1 product : noggin protein_id : NP_032737.1

name	LOC100039047 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149262371 GeneID:100039047
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001472211.1

name	4932411E22Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27369752 CCDS:CCDS25237.1 GeneID:214604 MGI:3045332
definition	codon_start : 1 product : hypothetical protein LOC214604 protein_id : NP_766122.1

name	Ankfn1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124286856 GeneID:382543 MGI:2686021
definition	codon_start : 1 product : ankyrin-repeat and fibronectin type III domain containing 1 protein_id : NP_001074402.1

name	Pctp (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:117320552 CCDS:CCDS25238.1 GeneID:18559 MGI:107375
definition	GO_function : GO:0008289 - lipid binding [Evidence IEA] GO_process : GO:0008203 - cholesterol metabolism [Evidence IMP]; GO:0006869 - lipid transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : phosphatidylcholine transfer protein protein_id : NP_032822.2

name	Tmem100 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13385928 CCDS:CCDS25239.1 GeneID:67888 MGI:1915138
definition	GO_component : GO:0016020 - membrane [Evidence IEA] codon_start : 1 product : hypothetical protein LOC67888 protein_id : NP_080709.1

name	Mmd (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13385688 CCDS:CCDS25240.1 GeneID:67468 MGI:1914718
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0019835 - cytolysis [Evidence IEA] codon_start : 1 product : monocyte to macrophage differentiation-associated protein_id : NP_080454.1

name	Hlf (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31982951 CCDS:CCDS25241.1 GeneID:217082 MGI:96108
definition	GO_function : GO:0046983 - protein dimerization activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA] GO_process : GO:0048511 - rhythmic process [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : hepatic leukemia factor protein_id : NP_766151.1

name	Stxbp4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6755692 CCDS:CCDS25242.1 GeneID:20913 MGI:1342296
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0015758 - glucose transport [Evidence IDA]; GO:0008286 - insulin receptor signaling pathway [Evidence IDA]; GO:0006605 - protein targeting [Evidence IDA] codon_start : 1 product : syntaxin binding protein 4 protein_id : NP_035635.1

name	LOC100039267 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149262377 GeneID:100039267
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001472806.1

name	Cox11 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:39841021 CCDS:CCDS25243.1 GeneID:69802 MGI:1917052
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005739 - mitochondrion [Evidence IEA] GO_function : GO:0005507 - copper ion binding [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 product : COX11 homolog, cytochrome c oxidase assembly protein protein_id : NP_950173.1

name	Tom1l1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110625896 GeneID:71943 MGI:1919193
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0005622 - intracellular [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005515 - protein binding [Evidence IPI]; GO:0030295 - protein kinase activator activity [Evidence IDA] GO_process : GO:0006886 - intracellular protein transport [Evidence IEA]; GO:0015031 - protein transport [Evidence IEA]; GO:0007169 - transmembrane receptor protein tyrosine kinase signaling pathway [Evidence TAS]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : Jerry protein; Src activating and signaling molecule product : target of myb1-like 1 protein_id : NP_082287.1

name	LOC100039104 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039104
definition	number : 1 pseudo : _no_value

name	LOC100039104 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039104
definition	number : 2 pseudo : _no_value

name	LOC100039104 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039104
definition	number : 3 pseudo : _no_value

name	LOC100039104 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039104
definition	number : 4 pseudo : _no_value

name	OTTMUSG00000001305 (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:149262364 GeneID:217066 MGI:3651308
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : predicted gene, OTTMUSG00000001305 pseudo : _no_value transcript_id : XR_035754.1

name	2210409E12Rik (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:134053860 GeneID:72381 MGI:1919631
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 2210409E12 gene pseudo : _no_value transcript_id : NR_003492.1

name	A930013B10Rik (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:149262369 GeneID:414094 MGI:3041185
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 ESTs product : RIKEN cDNA A930013B10 gene transcript_id : XR_035174.1

clone name	MSMg01-162G14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-163L17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-447F18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-437F14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-170I06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-172I22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-177N01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-413E24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-095M22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-530H04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-058E07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-367B02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-481E21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-527C16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-168L02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-471D16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-145O24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-515J16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-408P09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-400L02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-079I01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-434F11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-538L22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-410E05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-388F18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-520F03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-298L17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-371M15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-109M09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-445F20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-194B19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-060F10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-262C22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-406F02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-458P10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-154J09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-112A09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-482J15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-216F18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-443K04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-511N08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-366H14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-279K05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-148N04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-439G06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-395P19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-366J11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-368E01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-206A13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-517N03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-158N18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-483J23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-528E15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-059J20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-372G01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-325P14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-292D24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-292C24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-138K05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-331E24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-535H07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-298A05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-477E17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-163E19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-380N06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-524N09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-267N07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-525N23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-369A15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-106E17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-503H12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-447N23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-264L01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-124A10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-468B15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-102J18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-422I07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-072I13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-299F03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-311M17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-504D24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-093E15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-493D01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-468M16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-500L03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-329N24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-426L07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-069K18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-426M11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-089G19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-322M03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-378B11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-384A08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-065P19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-242J24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-006A19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-088A06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-315O18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-322A05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-154P22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-031I07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-235L16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-039J19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-288B22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-163I23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-323G08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-016P08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-346G03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-114K13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-290E16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-132P16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-331B09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-340N06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-310H18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-267P21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-194F04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-104D15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-247J23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-216L07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-231B09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-170J13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-150O12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-039L10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-277E14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-324G04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-036H14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-235K08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-107O23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-211L11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-007K13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-034P07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-226O01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-242B17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-018G11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-241M04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-014N03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-001K23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-194C11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-029J11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-017L10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-121F19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-179B10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-007E13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-308O18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-261A02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-102C03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-025F05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-066H12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-066B13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-063H08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-066L17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-319O09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-342O13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-029A08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-313H12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-126J06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-104B01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-190E07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-246E01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-180N16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-334D23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-286L22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-189J22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-016L09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-250D07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-160F05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-311C22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-210F01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-214A04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-078C12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-114L12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-224E19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-273D10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-141K18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-283L19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-208E09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-017M16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-121J15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-033K16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-256P17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-297G11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-154J20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-313C05
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-395P19.T7 (MSMg01no395_p19.b1)	MSMg01-395P19.TJ (MSMg01no395_p19.g1)
ACC	AG496672	AG496673
length	792	796
length of high quality (start - end)	499 (44 - 542)	246 (72 - 317)
definition	CHROMAT_FILE: MSMg01no395_p19.b1 PHD_FILE: MSMg01no395_p19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:00 2005	CHROMAT_FILE: MSMg01no395_p19.g1 PHD_FILE: MSMg01no395_p19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:00 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA TTCTTTCATGTCTCCTACTTTATTAAGGAATGTAAAAGCCACATACAGAC CGACCTGGGGGCACAACACTAAGAGACACAAATAAGCCTGAATTTGCTCA CAAAGAGCCTAAGGGAGGTTTCACACCGCCTTCTCCCAGATGGACTGCAA GTCCCCCGGTGACCACAAGGGGGCACTCTTAACACTTGCTCCTCAGCCCA ATTAATAGTACCATTTTGAAGAATGTATAGAGCAGAAACAGCACTGAGCT TTAAGACTGGTCCTGATGCAAGTTGGGTGGGTAAAAGAGTTCACTCTCCT TATGAAGGATCCATACTTCTTTTTTAAAGTTTCACTGATTAGAAACGGAG TCTCAAAATTAGGTTAAGCGCACAAATAAGTCCTTTGTACAGTGTCTTGA CTCATCGGTCATAAATGTCCCAAAGAGAGCTATTATTTGTGCATCTACTC TGAGTTCTTTCTGCTTCTTAAATAAGCACTGGGGCTAGGTTGGGCCTAAC TTACAGCACAAGGGTGTAGGTGTAGAATGAGTCTCTACAGCGGATGTTAT CTCATGAGATGAGCAATGACTGGGGTTTTTTCGACCATTGGTTTTCACCA TATGGGTAAACGTGGGAAAAGGGCAGTAATGGTGAAACATTGAACTCTCA GTACTTAAAGGAAGGTCTCGAATTGAACCCCTTTTTTCGGGAGCCTTCCC TCTCAAAAAGAGAAAAAATTTTGGGACCTTATTTCTCCACCG	ATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXTACTGTGCTTTTCTCTTGAATTTAGTCAT TGACTTACAGGTTCCTCAGTTTCCAATACAGTAGAAGTCACACTGTGTGA CTTGACTGCTATGTAAGCTTTGTCCACAGAAATGTCAATCTGGCTCAGGC TATTTGCCCTGGGATACCTTCTCTGCCCTGGAACTCATGCTGCAATGCTG TGAAGAAGTCTCTGTGATGTGTTGAGGCCGTAAGTTAGTTCAGAGAAGGC ATAACAAAGTTCCAGACATTGTTTTAATAGACAAGTTGTCACCAGGTGTC TGATACAAGTTATGGAGTACAGAGACCATGAAGGTTAATTCCTGATTACC TTTGTTCTAGGTCACTACATTCAGCGTGGTTCCTTATGCCATAGCAGATA CCTAATGTAGAGAGACATTAAAGCAGGTCCATGGTCTCTGAAGTAACATC ATGCTCTGTCTAAGAGCTACTCTTCTGCAAAAGATTTCCATTTTGGACAT TTATGATGATGGGGGAAAAAAAAGAGTCAGAGGATGTAGTCCCTGGGTGA AGTGATTGCTGAAGGTGTGTAAAGCCTTGATACCCCCCAGTATTTCCGAG AGAAAATTATTATGATGCTGCTGACATCTGAAAAAAAAGTCTTTCCTCCT TGAGGCACCTTTTTTTTTTTACTCCTTTTTAAAAGAGAAGGGGCTGTTGC TTAAAAAATTTCCTTGTGAATCCACCCCTTGCATAAGGAAATCTTT
quality values	Open. Hide. 11 11 11 17 20 35 41 41 20 20 17 17 20 19 22 11 11 11 22 25 37 47 46 33 33 33 30 30 21 23 11 9 9 9 11 9 11 15 13 15 18 24 24 28 47 47 48 35 36 28 28 31 31 59 31 31 30 27 16 15 12 12 11 11 11 11 23 25 41 42 50 50 48 50 50 53 57 50 36 36 36 37 37 43 53 57 57 57 57 57 57 57 53 47 47 42 42 42 47 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 50 57 57 57 57 57 57 57 57 57 57 57 68 68 68 68 68 68 57 68 68 59 57 57 57 50 50 50 50 50 50 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 44 43 24 18 12 12 12 12 11 12 24 32 44 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 57 57 57 57 57 57 59 59 59 57 57 57 48 57 57 53 53 50 43 41 34 23 26 19 13 10 9 9 15 22 41 47 47 47 46 48 48 59 59 59 57 57 59 57 57 57 57 59 59 59 59 59 57 57 59 57 57 54 54 54 57 59 57 57 57 57 57 54 59 59 68 68 57 57 57 54 54 54 54 54 54 57 59 59 59 59 54 54 54 59 59 68 68 68 59 59 48 48 48 48 48 59 59 59 48 48 48 59 43 37 28 28 28 37 37 48 48 48 39 39 36 36 36 39 32 11 9 9 9 9 14 16 24 30 30 37 37 41 37 37 41 40 43 36 43 37 35 11 9 9 7 7 6 8 15 15 18 24 22 18 24 18 18 22 30 34 41 37 36 26 19 15 17 13 14 9 9 9 12 9 12 10 10 10 10 12 19 23 19 19 17 22 24 22 18 8 8 6 6 6 8 8 13 12 15 15 24 19 21 15 13 13 15 13 9 9 9 14 21 23 23 23 20 17 25 15 13 12 12 15 17 17 10 10 9 9 9 9 9 10 8 7 8 8 8 13 8 9 9 9 18 13 13 10 10 8 8 8 8 8 8 10 10 10 10 8 8 10 11 18 19 10 10 10 10 10 14 8 8 7 9 9 10 9 8 8 8 8 8 8 10 11 12 10 10 10 10 10 13 9 9 9 9 8 8 8 6 6 6 8 10 8 8 11 8 8 9 9 9 9 10 13 8 8 8 8 8 8 8 8 8 9 13 15 15 13 8 9 9 9 10 15 13 10 6 6 6 7 8 10 8 10 10 10 13 12 8 13 8 9 10 10 15 15 8 8 8 6 6 6 7 14 8 8 8 8 8 8 11 13 11 11 11 11 11 12 12 11 10 10 7 6 6 6 8 6 8 8 8 8	Open. Hide. 9 10 10 9 9 8 7 7 9 6 8 11 16 18 30 27 29 37 37 37 37 39 39 39 40 39 37 25 25 9 9 9 11 11 9 9 9 13 13 10 18 20 21 37 19 19 10 10 10 26 25 50 42 47 27 27 11 9 9 9 9 9 11 11 11 10 10 12 12 19 25 34 41 41 48 48 53 53 57 57 57 59 59 59 59 59 59 59 53 53 53 53 53 53 53 53 53 48 50 50 68 68 68 68 68 50 42 41 41 41 42 59 43 43 46 44 44 39 35 35 35 42 42 48 48 48 51 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 50 50 50 50 50 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 51 51 50 68 68 68 68 68 68 68 68 68 68 59 57 52 57 52 57 57 68 68 68 68 68 68 68 68 68 59 59 57 50 50 50 51 51 68 68 68 68 68 68 68 59 59 57 57 59 59 57 57 68 57 57 68 68 68 68 68 68 68 68 68 68 57 57 57 57 44 44 44 36 36 28 36 47 57 57 57 57 57 59 59 54 57 57 68 68 68 68 68 68 68 68 68 57 57 54 54 54 59 59 68 68 68 68 68 57 57 47 59 46 59 59 59 59 57 57 57 57 57 57 57 57 59 59 53 53 50 50 50 50 47 34 28 19 13 12 8 8 8 8 8 8 11 14 12 18 23 29 47 47 48 50 53 59 59 57 57 57 57 57 57 59 59 59 59 59 59 59 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 48 48 48 48 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 41 41 31 32 32 28 36 36 44 42 35 35 47 47 57 57 57 57 57 57 48 54 57 57 68 68 68 68 59 59 59 59 68 59 59 59 59 59 68 68 68 68 59 59 47 47 35 59 59 59 43 57 48 48 48 57 59 48 48 59 47 47 43 47 59 41 41 47 43 39 36 36 37 37 37 37 43 43 36 37 41 41 37 37 41 43 41 41 46 47 47 48 48 43 39 36 39 39 32 32 18 17 17 25 25 47 47 47 40 40 40 40 39 25 28 15 13 13 19 16 19 14 15 15 30 32 36 41 41 37 36 39 32 29 32 37 32 29 30 37 37 37 39 40 39 41 41 41 25 25 29 21 21 18 23 28 23 23 21 25 14 11 11 19 13 13 11 12 9 8 8 10 11 8 13 11 13 8 9 9 9 11 8 9 12 14 12 21 13 13 13 18 26 31 35 32 30 30 21 17 13 13 9 8 8 8 10 9 9 9 8 10 10 10 11 11 11 13 12 8 8 8 8 10 17 10 10 8 8 8 8 8 8 9 10 16 20 10 10 12 10 10 8 11 11 10 11 11 12 15 8 8 8 8 8 8 12 19 18 13 12 9 9 9 9 13 8 10 9 9 10 10 10 9 10 9 8 8 8 8 11 6 6 6 6 6 6 9 13 13 11 11 9 13 10 10 11 13 18 24 43 44 21 13 8 8 8 8 8 6 6 6 8 10 11 9 13 9 7 7 6 6 6 6 6 8 10 12 16 10 9 8 8 8 8 8 10 8 10 10 9 14 17 18 15 11 15 12 11 11 11 11 8 10 8 8 8 8 8 8 8 8 9 10 10 9 8 9 9 9 6 8 8 8 8 8 10 7 7 6 6 6 6 6

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no395_p19.b1 MSMg01no395_p19.b1 CHROMAT_FILE:
MSMg01no395_p19.b1 PHD_FILE: MSMg01no395_p19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:00 2005
         (499 letters)



>mm_chr11_89581826_89582724
          Length = 899

 Score =  926 bits (479), Expect = 0.0
 Identities = 491/495 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttcatgtctcctactttattaaggaatgtaaaagccacatacagaccgacctg 64
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 gaattctttcatgtctattactttattaaggaatgtaaaagccacatacagaccgacctg 640

                                                                       
Query: 65  ggggcacaacactaagagacacaaataagcctgaatttgctcacaaagagcctaagggag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 ggggcacaacactaagagacacaaataagcctgaatttgctcacaaagagcctaagggag 580

                                                                       
Query: 125 gtttcacaccgccttctcccagatggactgcaagtcccccggtgaccacaagggggcact 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 gtttcacaccgccttctcccagatggactgcaagtcccccggtgaccacaagggggcact 520

                                                                       
Query: 185 cttaacacttgctcctcagcccaattaatagtaccattttgaagaatgtatagagcagaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 cttaacacttgctcctcagcccaattaatagtaccattttgaagaatgtatagagcagaa 460

                                                                       
Query: 245 acagcactgagctttaagactggtcctgatgcaagttgggtgggtaaaagagttcactct 304
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 459 acagcactgagctttaagactggtcctgatgcaagctgggtgggtaaaagagttcactct 400

                                                                       
Query: 305 ccttatgaaggatccatacttcttttttaaagtttcactgattagaaacggagtctcaaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 ccttatgaaggatccatacttcttttttaaagtttcactgattagaaacggagtctcaaa 340

                                                                       
Query: 365 attaggttaagcgcacaaataagtcctttgtacagtgtcttgactcatcggtcataaatg 424
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 attaggttaagtgcacaaataagtcctttgtacagtgtcttgactcatcggtcataaatg 280

                                                                       
Query: 425 tcccaaagagagctattatttgtgcatctactctgagttctttctgcttcttaaataagc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 tcccaaagagagctattatttgtgcatctactctgagttctttctgcttcttaaataagc 220

                          
Query: 485 actggggctaggttg 499
           |||||||||||||||
Sbjct: 219 actggggctaggttg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 899
Length adjustment: 10
Effective length of query: 489
Effective length of database: 889
Effective search space:   434721
Effective search space used:   434721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information