BAC Information

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BAC

Clone NameMSMg01-396B13
Chromosome11 (Build37)
Map Location 105,316,747 - 105,317,163
singlet/doubletsinglet
Overlap geneRnf190
Upstream geneCdc27, Myl4, LOC666721, EG629959, Itgb3, LOC666739, LOC629960, LOC666749, LOC632784, LOC276809, LOC100041125, 4921510J17Rik, Mettl2, LOC666771, Tlk2, 1700052K11Rik, Mrc2
Downstream geneEG666807, Tanc2, LOC667737, Cyb561, Ace, EG217246, Kcnh6, Wdr68, Ccdc44, Map3k3, Limd2, 2610019A05Rik, 2610204L23Rik, Ddx42, Ftsj3, Psmc5, Smarcd2, Tcam1, Gh, Cd79b, Scn4a, 2310007L24Rik, Icam2, Ern1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-396B13.T7 (MSMg01no396_b13.b1)MSMg01-396B13.TJ (MSMg01no396_b13.g1)
ACCAG496756AG496757
length758789
length of high quality
(start - end)
410 (65 - 474)247 (68 - 314)
definitionCHROMAT_FILE: MSMg01no396_b13.b1 PHD_FILE: MSMg01no396_b13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:08 2005CHROMAT_FILE: MSMg01no396_b13.g1 PHD_FILE: MSMg01no396_b13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGAATTCATT
GTGGTTACGANTAAAGTCTTCTGAAACTCTTCTTCTAAGCAGCCAATCAT
AGACATGGAGGAATTTATAGACCTGATTGTCAGGTAGTAACACAGCTACT
TATATCTTGCCTCAAATGAAGCTTCAGTATAGAGAGGTTAAATTTACATT
TTGCTTATTTGCCAAAATCAAGACAGTATAGTTTTAATGATATTTCACAG
AGCGAGCATTGCAAGAAAACGGTAAGACAGCTTATTTTAAAAGCACTTCT
TTCAGGTCAGGTGTGTTTTTTATCTTTTGTTTTTTTTTGTTTTTTGACAA
ATGTAGTCACAGAAAAAGGAGACAACATGTACACAGGCATGCACATGTGC
ATGTATGCACACATGTGTGATACTTTTAGAGACTGGAAAGGAATGTAGTC
TGTCCTTATTCCTGCTCTCCTTAGACAGGGTGTCTCAGTCTGAATTCCCT
GGAAATTTATGCTAGAGAGGAATTCTAATGTTCCAGAAGTCTTAAAATAT
TCCTCACTTGAATTTCCCGAAGTCGCGATAACTTTGAGGCCTTTGTGAAA
AACAATCGTTTTCTTTCCCCCACTTTAAAAATCTTCCCTTTTCCTGGGCC
CCTTCCCTCCTCCTTTAAAAGGGGTCCGCACACCAAATTCCTCATAACAC
CAACTTTGACCACTGGGTTTTTCCCCCCCAAAATTTTGTTAAAAAACCAT
CTCTGGTG
TGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAAAGATCTGCCTTCCAAGGATTAAAGGCATGCA
CTACCACACCCAGTTGAAGATGTATTTATAGTTCATGTATTTGAGTGTTT
TGTCTGCATGCATGTCTGTGCACCACATGCATGCACTGTCTGCAGAAGAG
AAAAAGATGCTCCCCTGGAACTGGAGTTAAAGGTGGCTGTGAGCTGCCAT
GTAGTGCTGGGAGTTGAACCCACACCCTCTGGAAGAGCAACCAGTGTGCT
CTTAATCACTGATTTTTTTTTTCAGCCGNAACAATCTTTAAAAAGTTCCA
TTTTCAGGGCTGACATGGCTCAGCAGTCAAGAGCACTGACTGCTCTTTCC
TTCCTTCTCCCCTCTTTTTTTAAATCCTAATTATCATTATCCTTTCCTTC
TACCATTCCTTACATCTTTTTTTTCTCTCTTTTCATTCCCTTTTTTCTTT
CTTTTTCCCTTTATATCTCCTTTTTCTATTTTCCCTTTATTCCCTCCCTT
CTCTTCCCCTTCTCTTTCTCTTTCCCTCCTTTTTCCCCTTTTCCCTTCCT
TATCCTTTTCCTCCCCTCCTATTCCTTTATTTCTTTCTTTTTTTCCCCCC
TTTTTTCCCTCTTCCTCCCTTTTATTATCCTCTCCTTTCTCTCTTTCCTT
CCTTTTTATCACCTCTTTTTCCTTCCTTAATTCTTTTCCTATCTCTTTAC
TATTTTCTTTTCCTTTTTTTCTTTACTCTTCTTTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no396_b13.b1 MSMg01no396_b13.b1 CHROMAT_FILE:
MSMg01no396_b13.b1 PHD_FILE: MSMg01no396_b13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:08 2005
         (410 letters)



>mm_chr11_105316682_105317492
          Length = 811

 Score =  752 bits (389), Expect = 0.0
 Identities = 407/417 (97%), Gaps = 7/417 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtcttctgaaactcttcttctaagcagccaatcatagacatggaggaatttatagacct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 agtcttctgaaactcttcttctaagcagccaatcatagacatggaggaatttatagacct 423

                                                                       
Query: 61  gattgtcaggtagtaacacagctacttatatcttgcctcaaatgaagcttcagtatagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 gattgtcaggtagtaacacagctacttatatcttgcctcaaatgaagcttcagtatagag 363

                                                                       
Query: 121 aggttaaatttacattttgcttatttgccaaaatcaagacagtatagttttaatgatatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 aggttaaatttacattttgcttatttgccaaaatcaagacagtatagttttaatgatatt 303

                                                                       
Query: 181 tcacagagcgagcattgcaagaaaacggtaagacagcttattttaaaagcacttctttca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 tcacagagcgagcattgcaagaaaacggtaagacagcttattttaaaagcacttctttca 243

                                                                       
Query: 241 ggtcaggtgtgttttttatcttttgtttttt-------tttgttttttgacaaatgtagt 293
           ||||||||||| |||||||||||||||||||       ||| ||||||||||||||||||
Sbjct: 242 ggtcaggtgtggtttttatcttttgttttttgttttttttttttttttgacaaatgtagt 183

                                                                       
Query: 294 cacagaaaaaggagacaacatgtacacaggcatgcacatgtgcatgtatgcacacatgtg 353
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 cacagaaaaaggagacagcatgtacacaggcatgcacatgtgcatgtatgcacacatgtg 123

                                                                    
Query: 354 tgatacttttagagactggaaaggaatgtagtctgtccttattcctgctctccttag 410
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 tgatacttttagagactggaaaggaatgtagtctgtccttattcctgctctccttag 66


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 410
Length of database: 811
Length adjustment: 9
Effective length of query: 401
Effective length of database: 802
Effective search space:   321602
Effective search space used:   321602
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)