BAC Information

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BAC

Clone NameMSMg01-396C12
Chromosome11 (Build37)
Map Location 29,462,553 - 29,462,899
singlet/doubletsinglet
Overlap gene1700034F02Rik
Upstream geneCcdc85a, Efemp1, LOC382504, Pnpt1, A630052C17Rik, Smek2, LOC100042972, Ccdc104, LOC672637, LOC100042985, A430106J12Rik, 2010316F05Rik, LOC100042990, Mtif2, Rps27a, LOC628830
Downstream geneLOC666403, Rtn4, C230094A16Rik, 4931440F15Rik, Spnb2, EG666427, LOC666432, 4930505A04Rik, Acyp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-396C12.T7 (MSMg01no396_c12.b1)MSMg01-396C12.TJ (MSMg01no396_c12.g1)
ACCAG496802AG496803
length768742
length of high quality
(start - end)
471 (33 - 503)516 (63 - 578)
definitionCHROMAT_FILE: MSMg01no396_c12.b1 PHD_FILE: MSMg01no396_c12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:13 2005CHROMAT_FILE: MSMg01no396_c12.g1 PHD_FILE: MSMg01no396_c12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGAATTCCCTGTAA
TTGCGGTTAATGGATTTTTGTAAGCTACCATGTGTATGCTGAAAAGTGAT
CTTGGGTCCTCTTCAAGAACAAATATGTGAATTTTAAAAAGGTTTCTAAT
AAAATGTCTCACCATTTGGAATATCTGCATTAATTCAATAAGTCAGTTTT
TGTTTTGACATAGTTTCTCTAGATAGCACAGATTTGCCAAAATGATTTTC
CCATCTTAGCCTCCTCGGGCTAGGATTACAAATGTGTCCCACTAGGCCCA
GTTGGTATATTTATTATATACCTGAGCTGTAAGAAACCCACATATATAAT
GCACATACCACACTAGATAGACAAGTGGCATTTATTTTTCCTTTCTTTTC
CTCCTTCCTTCTATCCTTCCCTCCTCTGTTCTTCTTTCCTCACTACTTTT
ATCCCTCTTTCCTTGCCTGTATTGATCCAGTGCATGGCATTGGACCAATA
GGTTTTCATTTTCATGTAAGAAAACTTAAGTTCCATTATCCATATTACCA
CTAAACTGGTAAGACAGAACTTCTTTTTTGGATTTTGGGAAGAATCCACA
ATAATGCCCATAACAGTTTGAAAGCCCAATATATAAAAAAGATTTTTTTT
TTTTGTGTGCCCATTTTGCAGGAAGAACTTCTTTTTATACTTTCCACCCA
CCAACTGTTTCCCCCCTTTTTCTACCCGTCACCAATCCCCGTAATTTTTC
TGCTTTTTCTTCTTGAAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXAACAGTAAGTAAGTAAATAAGTAAGACAGAGAAGCAAT
TAGAGAATGAAACTTAACCCTGACCTCTGGTCTGCATACTCATGTGCACC
ACTCATCTCTGCATGCATATACAGACAAGCACACACAAAATATTAAAAAT
CATACTAAATTTGGGCTGGAGATGGCTTAATGGTTAAAAACACATACTAC
TCTTGCAGAAGAGCCACCTCTGAGAGTTGCCAGCATCCATACTGGATAGC
TCATTATTCATCNGTAACTCTAGTTCTGGGGGACCTGACTCCTCCAGTCT
CTGTGGACACCAAGATTCATGTACACAAATAATATTTGGGGGTCTGGAGA
AATGGCTTAGCAGTTAAGAACACTGTTCACCTCCCAGAACCCACATGGCA
GCTCACACCTGTCTGTATCTTTAGTGCCAGAGCTTCTGATACCCTCACAC
AGACATACATGCACGTAAAACACCAATGAACATAAAGAAAGTAATAGTAA
TGAATATTTTTAAGTGATACTAAATTTTAAAAAGCCTGAGCCAGGCGTGG
TGGTGCATGCCTTTAATCCCAGCACTTGTGAAGCAGAGGCACTTGTATTT
TTAATTTAACGCCATCTTGGTCTACAAAGTGAGTCTAAGACAGCCTGCGT
TTTAACTACAAACCTTGCCTCCAAAACTAACTCTTTTATAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no396_c12.g1 MSMg01no396_c12.g1 CHROMAT_FILE:
MSMg01no396_c12.g1 PHD_FILE: MSMg01no396_c12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:13 2005
         (516 letters)



>mm_chr11_29462553_29463465
          Length = 913

 Score =  574 bits (297), Expect = e-168
 Identities = 336/350 (96%), Gaps = 3/350 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aacagtaagtaagtaaataagtaagacagagaagcaattagagaatgaaacttaaccctg 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct: 347 aacagtaagtaagtaaataagtaagacagagaagcaattagagagtgaaacttaa-cctg 289

                                                                       
Query: 61  acctctggtctgcatactcatgtgcaccactcatctctgcatgcatatacagacaagcac 120
           ||||||||||||||| |||| ||| ||||||||||| |||||||  ||||||||||||||
Sbjct: 288 acctctggtctgcatgctcacgtgtaccactcatctgtgcatgc--atacagacaagcac 231

                                                                       
Query: 121 acacaaaatattaaaaatcatactaaatttgggctggagatggcttaatggttaaaaaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 acacaaaatattaaaaatcatactaaatttgggctggagatggcttaatggttaaaaaca 171

                                                                       
Query: 181 catactactcttgcagaagagccacctctgagagttgccagcatccatactggatagctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 170 catactactcttgcagaagagccacctctgagagttgccagcatccatactggatggctc 111

                                                                       
Query: 241 attattcatcngtaactctagttctgggggacctgactcctccagtctctgtggacacca 300
           |||| ||| | |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 110 attagtcacctgtaactctagttctgggggacctgactcctccagtctccgtggacacca 51

                                                             
Query: 301 agattcatgtacacaaataatatttgggggtctggagaaatggcttagca 350
           ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 50  agattcatgtacacaaataatatttgggggtctggagaaatggctcagca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 913
Length adjustment: 10
Effective length of query: 506
Effective length of database: 903
Effective search space:   456918
Effective search space used:   456918
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)