XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACATT
GCATTTTAGGATGCTGTAAGGTTTAGATAAAGACATGTAAATTCCTAGCA
CTGTGACTGAAGATATTTATTGTTTTAGTTTTTTAGTTTCCATGTGGTTC
ACACAAACCAAAGTTCTATGTTAAAAGGAGGAAAAACATTAGAAGGGAGA
CAGATTGGTATCTAGAAAGTACAGATGTTTCTGAAAAGGTAAAAAAAAAT
AATAATTAATGAAGGGAAGGGTACTTGTTCATTTTAGAGACATGAATCAG
CTTATAACATGAAATTCACTGCCCAGTGTGCTCTAAAGCCAAGGCACACT
GGCAACACCTAGCAGGGTGTTAGAAACAGATTCAGGGAGATACGGAATCA
GCACATCTGAGCCAAGATTGAGAAATCTGTACTTGGAACAGTTGTGAAAA
ATCTCCATATTTAGTTATTTAATTTGGTGATATAGATACATTACCATTGT
TCCAACTTAGAATTCTGCAACTGACATTTGAGATATATTATCAGAGAAAT
ACCAAGTGTTCTCTTCTCTCTGGTATGGCTCATGTGAAAGGAAGACAAGT
GTCAATTTGAAATTTCTCTGAGGAAAGCAACATTGGCTAGCTCTAATTAT
ATGCCTCATTTCATGAAGAAATTGCTATGAGTCCGTAGAGTAAGATTTCT
TATGAGTAAAGCATGAAATAATTAAAAAGGGGCTTTCCN

GAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCTAGCCAGAGCAATTTGACAACAAAAAGAGATCAA
GGGGATACAAATTGGAAAGGAAGATGTCAAAATACCACTTTTTGCAGATG
ATATGATAGTATATATAAGTGACCCTAAAAATTCCACCAGAGAACTCCTA
AACCTGAGAAACAGCTTCAATGAAGTTTTTGGATATAAAATTAACTCAAA
CAAGTCAATGGCCTTTCTCTACACAAAGGATAAACAGGCTAAGAAAGAAA
TTAGGGAAACAACAACCTTCTTAATTGTCACAAATAATATAAAATACCTT
AGCGTGACTCTAACTAAGGAAGTGAAAGATCTGTATGATAAGAACTTAAA
GTCTCTGAAGAAAGAAATTACAGAAGATCTCAGAAGATGGAAAGATCTCC
CATGCTCATGGATTGGCAGGATCAATATAGTAAAAATGGCTATCTTGCCA
AAAGCAATCTATAGATTCAATGCAATCCCCATCAAAATTCCAACTCAATT
CTTCAATGAATTAGAAAGAGCAATCTGTAAATTCATCTGGAATAACAAAA
ACCTAGGATAGCAAAAACTCTTTTCAAGGATAAAAGAACCCCTGGTGGAA
TCACCATGCCTGACCTAAAGCTGGACTACAGAGCAATTGGTATTAAAACT
GCATGGAACTGGTATACCGACCGACAAGTAAACCAATGG

Query= MSMg01no396_f02.b1 MSMg01no396_f02.b1 CHROMAT_FILE:
MSMg01no396_f02.b1 PHD_FILE: MSMg01no396_f02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:24 2005
         (557 letters)



>mm_chr11_28589365_28590321
          Length = 957

 Score =  946 bits (489), Expect = 0.0
 Identities = 540/557 (96%), Gaps = 3/557 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcacattgcattttaggatgctgtaaggtttagataaagacatgtaaattcctag 63
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 201 ggaattcacattgcattttaggatgctgtaaggtttaggtaaagacatgtaaattcctag 260

                                                                       
Query: 64  cactgtgactgaagatatttattgttttagttttttagtttccatgtggttcacacaaac 123
           ||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct: 261 cactgtgcctgaagatatttattgtgttagttttttagtttccacgtggttcacacaaac 320

                                                                       
Query: 124 caaagttctatgttaaaaggaggaaaaacattagaagggagacagattggtatctagaaa 183
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 321 caaagttctatgttaaaaggaggcaaaacattagaagggagacagattggtatctagaaa 380

                                                                       
Query: 184 gtacagatgtttctgaaaaggtaaa-aa-aa-aataataattaatgaagggaagggtact 240
           |||||||||| |||| ||||||||| || || ||||||||||||||||||||||||||||
Sbjct: 381 gtacagatgtctctggaaaggtaaataataataataataattaatgaagggaagggtact 440

                                                                       
Query: 241 tgttcattttagagacatgaatcagcttataacatgaaattcactgcccagtgtgctcta 300
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 441 tgttcattttagagacatgaatcagcttgtaacatgaaattcactgcccagtgtgctcta 500

                                                                       
Query: 301 aagccaaggcacactggcaacacctagcagggtgttagaaacagattcagggagatacgg 360
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 501 aagccaaggcacactggcaacacctagcagggggttagaaacagattcagggagatacgg 560

                                                                       
Query: 361 aatcagcacatctgagccaagattgagaaatctgtacttggaacagttgtgaaaaatctc 420
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aatcagcacatttgagccaagattgagaaatctgtacttggaacagttgtgaaaaatctc 620

                                                                       
Query: 421 catatttagttatttaatttggtgatatagatacattaccattgttccaacttagaattc 480
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 621 catatttagttatttaatttagtgatatagatacattaccattgttccaacttagaattc 680

                                                                       
Query: 481 tgcaactgacatttgagatatattatcagagaaataccaagtgttctcttctctctggta 540
           |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct: 681 tgcaactgacatttgagatatattgtcagagaaataccaagtgttctctcctctctggta 740

                            
Query: 541 tggctcatgtgaaagga 557
           |||||||||| ||||||
Sbjct: 741 tggctcatgtcaaagga 757


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space:   518009
Effective search space used:   518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)