Query= MSMg01no396_j07.b1 MSMg01no396_j07.b1 CHROMAT_FILE:
MSMg01no396_j07.b1 PHD_FILE: MSMg01no396_j07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:44 2005
(492 letters)
>mm_chr11_88202778_88203669
Length = 892
Score = 938 bits (485), Expect = 0.0
Identities = 488/489 (99%)
Strand = Plus / Plus
Query: 4 gaattccacacctgtcacgctgggggaatctcatctccatacccccaatgctgaacagcc 63
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattccacacctgccacgctgggggaatctcatctccatacccccaatgctgaacagcc 263
Query: 64 tctcagccaggaagatgaaattataaatttataatacaacattacttcaattttcctctt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tctcagccaggaagatgaaattataaatttataatacaacattacttcaattttcctctt 323
Query: 124 catttgcgtctgtgcagcccagctctgctccagtggctcagggcccaggccgcacggggg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 catttgcgtctgtgcagcccagctctgctccagtggctcagggcccaggccgcacggggg 383
Query: 184 aaactggctggctgcatatcaatagcacattacagtagacccacgcgaacgctccatcaa 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aaactggctggctgcatatcaatagcacattacagtagacccacgcgaacgctccatcaa 443
Query: 244 gccacattacagcaggatgacccagccaccacttccattagcagctgggcccctcccaca 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gccacattacagcaggatgacccagccaccacttccattagcagctgggcccctcccaca 503
Query: 304 ctggccactgaacaatttatttgctccagtactctggatgcctgatcaatcccacagtaa 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ctggccactgaacaatttatttgctccagtactctggatgcctgatcaatcccacagtaa 563
Query: 364 ttatctcttgtcactaaaggggagaaaaaaaaatcaagccttctgcctggatgaacacct 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ttatctcttgtcactaaaggggagaaaaaaaaatcaagccttctgcctggatgaacacct 623
Query: 424 tccttgcacacagcctttccattgtggctgcccaagtcagaaaaggacaatagaacttga 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tccttgcacacagcctttccattgtggctgcccaagtcagaaaaggacaatagaacttga 683
Query: 484 gtgttctgt 492
|||||||||
Sbjct: 684 gtgttctgt 692
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space: 425124
Effective search space used: 425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no396_j07.g1 MSMg01no396_j07.g1 CHROMAT_FILE:
MSMg01no396_j07.g1 PHD_FILE: MSMg01no396_j07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:44 2005
(399 letters)
>mm_chr11_88335317_88336115
Length = 799
Score = 667 bits (345), Expect = 0.0
Identities = 385/407 (94%), Gaps = 17/407 (4%)
Strand = Plus / Minus
Query: 1 ttgtgattccaggccctcttcttatcggtcagacacacacagccctggagaatcagagag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 ttgtgattccaggccctcttcttatcggtcagacacacacagccctggagaatcagagag 480
Query: 61 ccatttcctgaggatctgtgataattatgggctttccccaaggcctttgaaccattcggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 ccatttcctgaggatctgtgataattatgggctttccccaaggcctttgaaccattcggt 420
Query: 121 atgcaaggactcatgggcttcagtaactgagtgttcaagcagtgagcagtttcttctcat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 atgcaaggactcatgggcttcagtaactgagtgttcaagcagtgagcagtttcttctcat 360
Query: 181 gggttgatttcctggaggcgattgcagaatagcagctagcaggtaatgcttttcaaaagc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 gggttgatttcctggaggcgattgcagaatagcagctagcaggtaatgcttttcaaaagc 300
Query: 241 gatatattttcttcattgcaaagcacagggccaaaataacctgtaacctattccatccaa 300
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 gatatatccacttcattgcaaagcacagggccaaaataacctgtaacctattccatccaa 240
Query: 301 ataaataagtctgctttcaaggtactgtcttcttcataaccca---cccccccc-----g 352
||||||||||||||||||||||||||||||||||||||| | || |
Sbjct: 239 ataaataagtctgctttcaaggtactgtcttcttcataa---agat------cctttttg 189
Query: 353 cccaaacctagaggcagcatatgcttttgcccttcaagtggtatcac 399
| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 tcgaaacctagaggcagcatatgcttttgcccttcaagtggtatcac 142
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 399
Length of database: 799
Length adjustment: 9
Effective length of query: 390
Effective length of database: 790
Effective search space: 308100
Effective search space used: 308100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
