Query= MSMg01no396_n20.b1 MSMg01no396_n20.b1 CHROMAT_FILE:
MSMg01no396_n20.b1 PHD_FILE: MSMg01no396_n20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:06 2005
(249 letters)
>mm_chr11_52331487_52332138
Length = 652
Score = 441 bits (228), Expect = e-128
Identities = 245/252 (97%), Gaps = 3/252 (1%)
Strand = Plus / Minus
Query: 1 gagaacacgtgaattgggggaaggggagggaattcaggcatagacaggaggaaattattt 60
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 gagagcacgtgatttgggggaaggggagggaattcaggcatagacaggaggaaattattt 393
Query: 61 gaccaaaccacactacatgcatttatgagatcctcaaatggtaaaatggaaaccaatcag 120
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 392 gaccaaaacacactacatgcatttatgagatcctcaaatggtaaaatggaaaccaaccag 333
Query: 121 ttcagaagtagagaaggagggagaaaaaaa---aagcatgtgggctggattaagtccctg 177
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 332 ttcagaagtagagaaggagggagaaaaaaaaataagcatgtgggctggattaagtccctg 273
Query: 178 cagatattttgtgaccatgaaggagatcaccaaccacagagtgagaaactagaaacaaag 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 cagatattttgtgaccatgaaggagatcaccaaccacagagtgagaaactagaaacaaag 213
Query: 238 ggtggccttggt 249
||||||||||||
Sbjct: 212 ggtggccttggt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 652
Length adjustment: 9
Effective length of query: 240
Effective length of database: 643
Effective search space: 154320
Effective search space used: 154320
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no396_n20.g1 MSMg01no396_n20.g1 CHROMAT_FILE:
MSMg01no396_n20.g1 PHD_FILE: MSMg01no396_n20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:06 2005
(285 letters)
>mm_chr11_52148432_52149118
Length = 687
Score = 543 bits (281), Expect = e-159
Identities = 285/287 (99%), Gaps = 2/287 (0%)
Strand = Plus / Plus
Query: 1 ttttcccttatggtcaagacaatgaaagctctggcctgggttttttactttttttttttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttcccttatggtcaagacaatgaaagctctggcctgggttttttactttttttttttt 260
Query: 61 tttactgggttttttactcgttttttt--acatttacttcaacagattagtcattggcta 118
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 261 tttactgggttttttactcgtttttttttacatttacttcaacagattagtcattggcta 320
Query: 119 aagggccacccctctggaagatggggctaccctttaggagtgtggatttaccctggccac 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagggccacccctctggaagatggggctaccctttaggagtgtggatttaccctggccac 380
Query: 179 actaaagagataggaagaacaattaattatccttcaatgagataatgtactgtttacagt 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actaaagagataggaagaacaattaattatccttcaatgagataatgtactgtttacagt 440
Query: 239 tttcactcctattatttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 285
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttcactcctattatttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 487
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 687
Length adjustment: 9
Effective length of query: 276
Effective length of database: 678
Effective search space: 187128
Effective search space used: 187128
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
