BAC Information

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BAC

Clone NameMSMg01-397D13
Chromosome11 (Build37)
Map Location 10,656,555 - 10,656,826
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC382483
Downstream geneVwc2, Zpbp, LOC625132, EG432534, 4930415F15Rik, Ikzf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-397D13.T7 (MSMg01no397_d13.b1)MSMg01-397D13.TJ (MSMg01no397_d13.g1)
ACCAG497612AG497613
length830774
length of high quality
(start - end)
---328 (71 - 398)
definitionCHROMAT_FILE: MSMg01no397_d13.b1 PHD_FILE: MSMg01no397_d13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:34 2005CHROMAT_FILE: MSMg01no397_d13.g1 PHD_FILE: MSMg01no397_d13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATTACCGCACCCCCGCGNGA
ATTCATTTATTTTTGCATAACCCCCCAAATATGCTCCATTTGGCTGTTAT
AACTCCCAGAAGTCAAATTCACTCATCCCACAGTTTTTATTTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTATACGCCCCCCCCCCACCCCCCCCCANC
CCCCCCCCCCCCCCCCCCCACCACCCACCCCCCCATCCCACACCCCCCCC
CCCCACTTTTTTCCCCCCCCCCCCCCCCACCCCCCCACCCCCTACCCCTC
TCACACCCAACCACCCCCCTCTCCATCCCCTTCCCCCANACCCCCCCCCC
CCCCCCCCCCCTCCCTTCCCCCCCCCCACCCCCCACCACCCCTCCCCCCC
CCCATCCCCCCTCTCCCTTCCCCCCCCCCCCCCCCCCCTCCCCCCCACTC
CCCCCCCCCCCCCCCCCCCCACCCCACCCCCACTCCCCCCCCCCCAACCA
CCCCCCTCCCCCTACCCTCCCCACCCCCTTCCCACACCCCCCACCCCACA
CCCCCCCCACCCACTACCACCACCCCCCCCCCCCCCCACATCCCCACCCA
CCCCCCCCCACCCCCCACCCCCACCCCAACCACCCCCCCCCCCCACCCCC
CCCCCCCCCCCCCCCACCCACCCACCAACCCCCCTCCCCCCCCCCCCCCC
CTCCCACCCCCCCCTCCCCCCACCCCCCCCACATCCACCCCCCCCCCCCC
ACCCCATTCTCCCACCCCCCCCACCCCCCTACCACACCCCTCCCCCAAAC
CCCCACCCAACACCACCCCACCACCTCCCC
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXATTGCTTTGCTTCACTTAATAACCCCCTTC
TTTATAAAAGTAAAAACAAAAAGTGCTGGCATTGTTTTCAGTAAAATTTT
AGGAAAATTTCTAAGATAAAAGAGATATATCTTATAGTTTATGTTGAATG
CTAGGTCAGTTAAGCAAAGACAACCAAAGCTAAATCTGTGATCATACACG
TCATCCATCCTTTATTTATGCATATATCGATATATATGCATTTATATTTA
GCTGTGAGTTAGAAGAGGATTTGAACGAGAGAGAGAGAGAGACAAATGGA
CAGAGGGAAGAGATGAGGATAGAAGAGAGAAAGGGAAGGAGGAGGNNNNN
TNNNNTNNTTTNCCCCCCCCCCTCCTTCTTTTTCTTTTCTTTTTCTTTTC
CCCCTTTCTTCTTTTCCTTTTTCCCCTTTCCTTTTCCCTCCTTTCTCTCT
TTTTCCTTTCCTTTTCTTCCCTCCTTTCTTTCTTTTCTTCTCCCCCTTTC
CCCCCCTTCTTTCCTCCCTTTTTCTTCTTCTTCCTCTCTCCTCCTTTTTT
CTTCTCCTCTCTTCTTCCTCTTTTCCTCCTTTCTTCTCTTCTCTTTTTCC
TTTTTTTTTTTTTTTTTCCCCTCTTTTCCTTCCCCTTTTCCTCCCTTTTC
CTTTCTTCTCTCTCTTTTCCCTTTTCTCCCCTCTTCCTCTCTTTCTTTTT
TTTTTCTTTTCCTTCTCTCTCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no397_d13.g1 MSMg01no397_d13.g1 CHROMAT_FILE:
MSMg01no397_d13.g1 PHD_FILE: MSMg01no397_d13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:35 2005
         (328 letters)



>mm_chr11_10656380_10657107
          Length = 728

 Score =  433 bits (224), Expect = e-126
 Identities = 260/276 (94%), Gaps = 8/276 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   attgctttgcttcacttaataacccccttctttataaaagtaaaaacaaaaagtgctggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 attgctttgcttcacttaataacccccttctttataaaagtaaaaacaaaaagtgctggc 388

                                                                       
Query: 61  attgttttcagtaaaattttaggaaaatttctaagataaaagagatatatcttatagttt 120
           |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct: 387 attgttttcagtaaaattttaggagaatttctaagatgaaagagatatatcttatagttt 328

                                                                       
Query: 121 atgttgaatgctaggtcagttaagcaaagacaaccaaagctaaatctgtgatcatacacg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 atgttgaatgctaggtcagttaagcaaagacaaccaaagctaaatctgtgatcatacacg 268

                                                                       
Query: 181 tcatccatcctttatttatgcatatatcgatatatatgcatttatatttagctgtgagtt 240
           |||||||||||||||||||||||||||| |||||||||||||||||||||  |||||| |
Sbjct: 267 tcatccatcctttatttatgcatatatctatatatatgcatttatatttatttgtgagat 208

                                               
Query: 241 agaagag----gatttgaacgagagagagagagaga 272
           |||||||    |    |||| ||| |||||||||||
Sbjct: 207 agaagagaaaag----gaacaagaaagagagagaga 176


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 728
Length adjustment: 9
Effective length of query: 319
Effective length of database: 719
Effective search space:   229361
Effective search space used:   229361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)