BAC Information

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BAC

Clone NameMSMg01-397E24
Chromosome11 (Build37)
Map Location 85,269,155 - 85,314,022
singlet/doubletdoublet
Overlap geneBcas3
Upstream geneAatf, Lhx1, Mrm1, BC022224, Ggnbp2, Pigw, Znhit3, Car4, Usp32, LOC668794, LOC234848, 1700125H20Rik, Appbp2, D630032N06Rik, Ppm1d
Downstream geneTbx2, Tbx4, LOC668751, Brip1, LOC668803, Ints2, Thrap1, 0610013E23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-397E24.T7 (MSMg01no397_e24.b1)MSMg01-397E24.TJ (MSMg01no397_e24.g1)
ACCAG497682AG497683
length753804
length of high quality
(start - end)		394 (39 - 432)392 (67 - 458)
definitionCHROMAT_FILE: MSMg01no397_e24.b1 PHD_FILE: MSMg01no397_e24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:42 2005CHROMAT_FILE: MSMg01no397_e24.g1 PHD_FILE: MSMg01no397_e24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:42 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,269,155 - 85,269,544)(85,313,631 - 85,314,022)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTC
CTGTGCTCTCCTTCCTGTAGCTGACAGTAATGTGTCACACCTTTTTGCTC
CCTGCTCACCTGACTTTATCTACTGAGAGTTCCTTCCTTGCCATCTGGTG
TCCTGTTTCTTGTAAATGTAAAACTTTTCTACCTCAGAATTGTATACACA
CCGGGGTTTTAGTTAGGCGCTTTTCATGATTTCTGATGGATGACAGGGTG
GAGTGTGGTGCGGAGAAGGCAAGCAGAACAATTTATTGCCAGATCCAGAT
CTAGGACCAGAGCCCCGGCTAGTTAGTATTAAAAATTCTTTTTGGTACTT
TAAAAATTGTTTAGCATTTTATTCATGGACATTACATTTTGCTGGTATAG
TTTTCGGTTATCTTTGTCTTTATTGACCCCTGGGCACTAGGCTGTTTGTA
GTGATTGTGTTTGATATGTGTGGNGACTGGAGCGCCCCTCTTAAATTTAA
GATCTAGCATTTTTCCCTTTCTTTTACATCCCTCTCAGTCCATCACTTAT
CCCGCGTTTGACTGCCTCTTTCTTCCTTCCTTCCCTTCTCCATTTTTTTC
GTCTTATCTAACCCTCCCATTTCTTATTTTCACTCTTCCCGTATTTCTAT
TTTCCCTTTCCCCCCCTTTTTCACCCCCTCTCTTTTTCCTTTCTTTTCTT
CTTCTTTCTTTTTTTCGCTCTTACCTCCCCTCTATCATTATTTATCTCTT
TAC

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCTCACTGAGATTTCCATAGAAATTACAAGTAAAC
TCAGAGGAAACTAACACTATAACGCTATAATGTATTCCAGAGTCAGGCAT
TTACTGATTTTCAGCAGTGCTTTCTAGCTCTCCCAGGATGGATATAATGT
AGTATTTTAGACACTGAGATATATTTAATTATCAACTAATTGTTAGGAGA
GAGTAAGAGAAACAGATAGAGACAGAGAGTGAGCCCTTCTGTAACAGTAA
GTGAACTCAGGGTTTTGCCCATGCTAGGCAAATACTGTAACTGCTAACCT
CCATCCCAGCCCCTTGTTGAGCTTTTAAGGCAGCATCTTTCTGTTTTGCA
TTCCTAAATCACTGGGATTTTAGGCCTTCAGATTTGGTCTTTATGCACTA
ACTTTTACCTTCTAATGTTTTTAAAATAACTTACTGTGTGCTATTTTAAA
AGAGAAATTTATATTTTTTCTGCCCAGGCACTCATGTCTTCCCATGCATA
TAGCTTTTATTCCCCCCTTTTCCCGAAGAACAGAAGTGGCCTTTTCACAT
TTTCTAAAGGGCCCGGGACCACCCCTGGGGGGGGCCCCCCCCTCTCCAGT
TCCCGGCCCGGGAAAACTGGTATTTTTTTTTGTTTATAACTTAATCCTTT
TTAACCCTGGGGAGTAATGCGACCCCCCACGGGGGGCCCTTTTTCTCGTG
CCTTCTCTAAATCCACAAGAAACCTTCCTGTGGCTCAAATCCTTCTCTTT
ATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no397_e24.b1 MSMg01no397_e24.b1 CHROMAT_FILE:
MSMg01no397_e24.b1 PHD_FILE: MSMg01no397_e24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:42 2005
         (394 letters)



>mm_chr11_85268951_85269744
          Length = 794

 Score =  739 bits (382), Expect = 0.0
 Identities = 388/390 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcctgtgctctccttcctgtagctgacagtaatgtgtcacacctttttgctccc 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcctgtgcactccttcctgtagctgacagtaatgtgtcacacctttttgctccc 264

                                                                       
Query: 65  tgctcacctgactttatctactgagagttccttccttgccatctggtgtcctgtttcttg 124
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 265 tgctcacctgactttatctactgagagtttcttccttgccatctggtgtcctgtttcttg 324

                                                                       
Query: 125 taaatgtaaaacttttctacctcagaattgtatacacaccggggttttagttaggcgctt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 taaatgtaaaacttttctacctcagaattgtatacacaccggggttttagttaggcgctt 384

                                                                       
Query: 185 ttcatgatttctgatggatgacagggtggagtgtggtgcggagaaggcaagcagaacaat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttcatgatttctgatggatgacagggtggagtgtggtgcggagaaggcaagcagaacaat 444

                                                                       
Query: 245 ttattgccagatccagatctaggaccagagccccggctagttagtattaaaaattctttt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttattgccagatccagatctaggaccagagccccggctagttagtattaaaaattctttt 504

                                                                       
Query: 305 tggtactttaaaaattgtttagcattttattcatggacattacattttgctggtatagtt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tggtactttaaaaattgtttagcattttattcatggacattacattttgctggtatagtt 564

                                         
Query: 365 ttcggttatctttgtctttattgacccctg 394
           ||||||||||||||||||||||||||||||
Sbjct: 565 ttcggttatctttgtctttattgacccctg 594


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 394
Length of database: 794
Length adjustment: 9
Effective length of query: 385
Effective length of database: 785
Effective search space:   302225
Effective search space used:   302225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no397_e24.g1 MSMg01no397_e24.g1 CHROMAT_FILE:
MSMg01no397_e24.g1 PHD_FILE: MSMg01no397_e24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:42 2005
         (392 letters)



>mm_chr11_85313587_85314378
          Length = 792

 Score =  743 bits (384), Expect = 0.0
 Identities = 390/392 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcactgagatttccatagaaattacaagtaaactcagaggaaactaacactataacgct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 ctcactgagatttccatagaaattacaagtaaactcagaggaaactaacactataacgct 377

                                                                       
Query: 61  ataatgtattccagagtcaggcatttactgattttcagcagtgctttctagctctcccag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 ataatgtattccagagtcaggcatttactgattttcagcagtgctttctagctctcccag 317

                                                                       
Query: 121 gatggatataatgtagtattttagacactgagatatatttaattatcaactaattgttag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 gatggatataatgtagtattttagacactgagatatatttaattatcaactaattgttag 257

                                                                       
Query: 181 gagagagtaagagaaacagatagagacagagagtgagcccttctgtaacagtaagtgaac 240
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 gagagagtgagagaaacagatagagacagagagtgagcccttctgtaacagtaagtgaac 197

                                                                       
Query: 241 tcagggttttgcccatgctaggcaaatactgtaactgctaacctccatcccagccccttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 196 tcagggttttgcccatgctaggcaaatactgtaactgctaacctccatcccagccccttt 137

                                                                       
Query: 301 ttgagcttttaaggcagcatctttctgttttgcattcctaaatcactgggattttaggcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 ttgagcttttaaggcagcatctttctgttttgcattcctaaatcactgggattttaggcc 77

                                           
Query: 361 ttcagatttggtctttatgcactaacttttac 392
           ||||||||||||||||||||||||||||||||
Sbjct: 76  ttcagatttggtctttatgcactaacttttac 45


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 392
Length of database: 792
Length adjustment: 9
Effective length of query: 383
Effective length of database: 783
Effective search space:   299889
Effective search space used:   299889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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