BAC Information

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BAC

Clone NameMSMg01-397N19
Chromosome11 (Build37)
Map Location 105,688,522 - 105,688,941
singlet/doubletsinglet
Overlap geneTanc2
Upstream geneLOC632784, LOC276809, LOC100041125, 4921510J17Rik, Mettl2, LOC666771, Tlk2, 1700052K11Rik, Mrc2, Rnf190, EG666807, LOC667737
Downstream geneCyb561, Ace, EG217246, Kcnh6, Wdr68, Ccdc44, Map3k3, Limd2, 2610019A05Rik, 2610204L23Rik, Ddx42, Ftsj3, Psmc5, Smarcd2, Tcam1, Gh, Cd79b, Scn4a, 2310007L24Rik, Icam2, Ern1, LOC100041277, Tex2, Pecam1, Gm885, Polg2, Ddx5, Ccdc45, Smurf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-397N19.T7 (MSMg01no397_n19.b1)MSMg01-397N19.TJ (MSMg01no397_n19.g1)
ACCAG498102AG498103
length830789
length of high quality
(start - end)		278 (39 - 316)419 (68 - 486)
definitionCHROMAT_FILE: MSMg01no397_n19.b1 PHD_FILE: MSMg01no397_n19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:26 2005CHROMAT_FILE: MSMg01no397_n19.g1 PHD_FILE: MSMg01no397_n19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGGAATTCTTT
GTTCATTTCCGAGCCCCATTTTTTAATGGGGTTATTTGATTTTATGGAGT
CTACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCCCTGTCCGAT
TTGGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTCTT
ATTGATGGTGTCTTTTGCCTTGCAGAAGCTTTGCAATTTTATGAGGTCCC
ATTTATCGATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTATTCAGG
AATTTTTCCCCTGTACCCTTATCTTCGAGGCTTTTCCCTACTTTCTCCTC
TATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTAATCCACTTAT
ATTTGACCTCACCACCAGGATATAGTAATGGATTAATTCGCAATTTTCTA
CATGACAATCACCAGTTGTTGCCCTTCCATTTTGCTGTAAAAGCTGCTCT
TTTTTCTACCGGCGGGTTTTTACCTCCCTTTTTCTTAAATAAATTGTACT
TTATATTGTGACGACTTCACTTCCGCATTTTCAATCTTTCTCCTTTCTTC
CTTCTTATTTGTCCTTTTTCCACCCTTCTTTTCTTCCACCCTCCTTTCTT
CCCCTTTTTCTTTTATACTTTTTTTTCCCTTCCTCTATTCTTCGCCCCCG
CTCCCTTTCCCTTTTCCATTCCCTTTTATCTCTTCACCGCCCCTTCCTTT
ATTCTCCTACTCTCCCCTCTTCCTCTTTTTCTTCCCTTTTCTTTTCCTCT
TACACCCTTCTATTTCTCTTAATCTTTCCG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAATACCCAGGACCCTCATGGCAGAAGTAGAAAA
CTGACTCCCACAAGTTGTGCTGACATTTATAGGCACGTGCTAGGGTACAT
GCACAAACCTATATGCACACACAGACATACAGAAAACCAATCAATAAATG
TAACCTTCCTGCATACCACTTCAGACTCATTCAGTGTGTGCATCTTTTCA
ATGTAAATTATGCTTGTGGTAACACATGAACTATTTCTAGGATTATTCTC
TTATAAGCTCATCACTAGTTACAATTATATATTTAGGTTATAGAAAAAAA
ATCTCGTTTTTTTAAAGGCAAGGATAAACCTTAAAAAAAAACCCAAAAAA
CAAAGGAAAATCAAATAAGCCCAAGATTTATTAAAGTTAACAAACCTGCT
CATTCAAATGTAAATAGAAACAGCTAAAGGGGAGAGGAGGCAGAATGGAA
AGTTGGGACATGAATGCTCTAAAAGGGTTTTGACTGAAGCATACTTATCC
ATGGAAAATACCATGAGCCAGTTGAAAAAAAGCCACTTATGGCCTGCGCA
AAAAAAGGAAGGTCTTCATGTTAACGGGGCCGGGTAAAAAAAAAAAAAAC
AGGGCAAGCTTGTTTCCCTCCCAAAGAAACAAAAAACTACTTTGGAGGAC
CCCTGGTTCTCCCAAAAAATAAAAAATTTTGGGGTTCTCTCAAAGCCTTT
TATAGCATTTTCTTTTTACCTATCCAAGAAATAAATCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no397_n19.g1 MSMg01no397_n19.g1 CHROMAT_FILE:
MSMg01no397_n19.g1 PHD_FILE: MSMg01no397_n19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:26 2005
         (419 letters)



>mm_chr11_105688216_105689035
          Length = 820

 Score =  781 bits (404), Expect = 0.0
 Identities = 416/420 (99%), Gaps = 1/420 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatacccaggaccctcatggcagaagtagaaaactgactcccacaagttgtgctgacatt 60
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 aatacccaggaccctcctggcagaagtagaaaactgactcccacaagttgtgctgacatt 667

                                                                       
Query: 61  tataggcacgtgctagggtacatgcacaaacctatatgcacacacagacatacagaaaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 tataggcacgtgctagggtacatgcacaaacctatatgcacacacagacatacagaaaac 607

                                                                       
Query: 121 caatcaataaatgtaaccttcctgcataccacttcagactcattcagtgtgtgcatcttt 180
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 caatcaataaatataaccttcctgcataccacttcagactcattcagtgtgtgcatcttt 547

                                                                       
Query: 181 tcaatgtaaattatgcttgtggtaacacatgaactatttctaggattattctcttataag 240
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 546 tcaatgtaaattatgcttgtggtaacacatgaactatttctagggttattctcttataag 487

                                                                       
Query: 241 ctcatcactagttacaattatatatttaggttatagaaaaaaaatctcgtttttttaaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ctcatcactagttacaattatatatttaggttatagaaaaaaaatctcgtttttttaaag 427

                                                                       
Query: 301 gcaaggataaaccttaaaaaaaaa-cccaaaaaacaaaggaaaatcaaataagcccaaga 359
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 426 gcaaggataaaccttaaaaaaaaaacccaaaaaacaaaggaaaatcaaataagcccaaga 367

                                                                       
Query: 360 tttattaaagttaacaaacctgctcattcaaatgtaaatagaaacagctaaaggggagag 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 tttattaaagttaacaaacctgctcattcaaatgtaaatagaaacagctaaaggggagag 307


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 820
Length adjustment: 9
Effective length of query: 410
Effective length of database: 811
Effective search space:   332510
Effective search space used:   332510
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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