BAC Information

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BAC

Clone NameMSMg01-398G23
Chromosome11 (Build37)
Map Location 31,968,595 - 32,165,637
singlet/doubletdoublet
Overlap geneLOC669207, Il9r, 3300001G02Rik, Rhbdf1, Mpg, Mare
Upstream geneAsb3, Stc2, 2310022M17Rik, Cpeb4, 4930524B15Rik, Nsg2
Downstream geneHba-x, Hba-a1, F830116E18Rik, Hbq1, Sh3pxd2b, Ubtd2, 1700007I06Rik, Stk10, Fbxw11, LOC666616, 1700008A04Rik, LOC666620, LOC670035, LOC432548, Fgf18, Npm1, LOC666646, Tlx3, Ranbp17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-398G23.T7 (MSMg01no398_g23.b1)MSMg01-398G23.TJ (MSMg01no398_g23.g1)
ACCAG498537AG498538
length786789
length of high quality
(start - end)
411 (49 - 459)388 (80 - 467)
definitionCHROMAT_FILE: MSMg01no398_g23.b1 PHD_FILE: MSMg01no398_g23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:09 2005CHROMAT_FILE: MSMg01no398_g23.g1 PHD_FILE: MSMg01no398_g23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:10 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,165,313 - 32,165,637)(31,968,595 - 31,968,982)
sequence
AAAGTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCC
GCGGAATTCATATCCTTTCTCTGACTTTTTCTTGAATTGTTTTTTCTTTA
TAGACTTGAAAGAATTATTTATATATGTAAGTTTAAAAGTAAGACTTTTG
GACCAGGAGTGGTGAATGTCTTTAATCTCAGCGCTCTAGATACAGAGGCA
GGCACATATTTCTGAGTCCCAGGCCAGCCTGGTTTACATAGTGACTTCCA
GATTAGTCAGAGCCACGTGGTAAGATCCTGTCTGAAAAAAAATAATGAAA
AACATACAAAACAAAACAAAATCCTTTTCTTTCCTTTTTTTTTTGGTCAC
AATAGGTAGCCATTTTGCTATTTCTGTGTAGTTTTTGCCAGAATTTTGAT
TTTTATGGTGTCATGGTTTCAGTGTAGTCTCTTGTGGTTTCTGAGTTTCC
TTATCTGCAAGGCCTTCTGCTCTGGGCGATGATGGTGCTACTTTGTTTGT
TTGAGTCCGGGGTTAACTCTGTATTCCAGAAGGGTTTGGGATTTACTGTG
GAGCTAGCCTATTGTATAGACTACACTTAAACTGGGGGGGGCCACCCTTT
CCTGGTTGGGGAGGGGAAGAAATTTAGTTGGTCATCCAATGGCCCGGCCT
TTTTAGAAGATTATAAAAGAACATTTTTTTTTTTGTTTTTCTTTTACAAC
AATTTATTTGTCGTTCTTCGTAAAGTAACCCCCTTTTTCTCATATCCCTC
CCCTTATATGGTTTTTTCGCTCTTCTTTCCGTTTAT
NTTTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCATCAAACTCTGCACATTTC
CTGAAGCCTTCATGGTATTCCCCCCAAATATGCTTTATTTCTGTATCAAT
TACGTTGGATAATGGTATCATCAGCCATTGGGCTTTGCAGTGTGAATATT
GTTGTTGTGGCTGTTGTTATTTTTAATTATTGTTGATTTGAAGCTCTAGG
GACTGACCCCAGGACCTTGTACATCCAGGACAAGAGCTCTTCCAGTGAGC
CGAATCCCCACCCTAAGTGGCACGATTACAGCGTTTCGCAGATGTTCACA
AATGTAGGTCAAGCAGGCAGAGTACTAGGTTCGACTTGCCCTGCTATTCC
AGTAACTGCCATGTGCCCACACCCTGGCTGGAGCTCACACACCTGCTCAC
CGGCACCTCCTGCATCTTCCTTTCAGGCATCTGAGCGCCCCCCCACCCAC
AGCCCTGGTTCTTCTCCAGGACCAGCACCACCCATTCATTTGTCCTCCCT
GCTAAGTTTTTCCCCTGCAGCTTTTAAATAACCCATTTTTATTAAAAAAA
TGGGGCCTTTTTCCGGCCAAAAATTTATTTCCCCTCTTAGCCAAATTGCC
CCCCTATATTATAAAAAAAAAAAAAAACCCCCCCTTTTAAAGAATGTCTC
TCTTCAAAAAAAAAAAAAAAAACCTGTTTTCCAAATTGTTGCGGCGGCGA
AAAACCCCTCCTCTGGGGTTGCAATACACCCTTTTTCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no398_g23.b1 MSMg01no398_g23.b1 CHROMAT_FILE:
MSMg01no398_g23.b1 PHD_FILE: MSMg01no398_g23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:11:09 2005
         (411 letters)



>mm_chr11_32164827_32165637
          Length = 811

 Score =  470 bits (243), Expect = e-137
 Identities = 289/325 (88%), Gaps = 32/325 (9%)
 Strand = Plus / Minus

                                                                       
Query: 119 tgtctttaatctcagcgctctagatacagaggcaggcacatatttctgagtcccaggcca 178
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 811 tgtctttaatctcagcgctctagatacagaagcaggcacatatttctgagtcccaggcca 752

                                                                       
Query: 179 gcctggtttacatagtgacttccagattagtcagagccacgtggtaagatcctgtctgaa 238
           || ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 751 gcttggtttacatagtgacttccagattagtcagagccacatggtaagatcctgtctgaa 692

                                                                       
Query: 239 aaaaaataatgaaaaacatacaaaacaaaacaaaatccttttctttcc------------ 286
           ||||||||||||||||||||||||||||||||||||||||||||||||            
Sbjct: 691 aaaaaataatgaaaaacatacaaaacaaaacaaaatccttttctttcctttttttttttt 632

                                                                       
Query: 287 --------------------ttttttttttggtcacaataggtagccattttgctatttc 326
                               ||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 ttttttttttttttttttttttttttttttggtcacaataggtagccattttgctatttc 572

                                                                       
Query: 327 tgtgtagtttttgccagaattttgatttttatggtgtcatggtttcagtgtagtctcttg 386
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 tgtgtagttattgccagaattttgatttttatggtgtcatggtttcagtgtagtctcttg 512

                                    
Query: 387 tggtttctgagtttccttatctgca 411
           |||||||||||||||||||||||||
Sbjct: 511 tggtttctgagtttccttatctgca 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 811
Length adjustment: 9
Effective length of query: 402
Effective length of database: 802
Effective search space:   322404
Effective search space used:   322404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no398_g23.g1 MSMg01no398_g23.g1 CHROMAT_FILE:
MSMg01no398_g23.g1 PHD_FILE: MSMg01no398_g23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:11:10 2005
         (388 letters)



>mm_chr11_31968395_31969182
          Length = 788

 Score =  750 bits (388), Expect = 0.0
 Identities = 388/388 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcatcaaactctgcacatttcctgaagccttcatggtattccccccaaatatgctttatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcatcaaactctgcacatttcctgaagccttcatggtattccccccaaatatgctttatt 260

                                                                       
Query: 61  tctgtatcaattacgttggataatggtatcatcagccattgggctttgcagtgtgaatat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctgtatcaattacgttggataatggtatcatcagccattgggctttgcagtgtgaatat 320

                                                                       
Query: 121 tgttgttgtggctgttgttatttttaattattgttgatttgaagctctagggactgaccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgttgttgtggctgttgttatttttaattattgttgatttgaagctctagggactgaccc 380

                                                                       
Query: 181 caggaccttgtacatccaggacaagagctcttccagtgagccgaatccccaccctaagtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caggaccttgtacatccaggacaagagctcttccagtgagccgaatccccaccctaagtg 440

                                                                       
Query: 241 gcacgattacagcgtttcgcagatgttcacaaatgtaggtcaagcaggcagagtactagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcacgattacagcgtttcgcagatgttcacaaatgtaggtcaagcaggcagagtactagg 500

                                                                       
Query: 301 ttcgacttgccctgctattccagtaactgccatgtgcccacaccctggctggagctcaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttcgacttgccctgctattccagtaactgccatgtgcccacaccctggctggagctcaca 560

                                       
Query: 361 cacctgctcaccggcacctcctgcatct 388
           ||||||||||||||||||||||||||||
Sbjct: 561 cacctgctcaccggcacctcctgcatct 588


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 788
Length adjustment: 9
Effective length of query: 379
Effective length of database: 779
Effective search space:   295241
Effective search space used:   295241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)