BAC Information

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BAC

Clone NameMSMg01-399E13
Chromosome11 (Build37)
Map Location 40,928,645 - 40,929,015
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039241, LOC382508, LOC432549, Mat2b, Hmmr, Nudcd2, Ccng1
Downstream geneLOC100039256, LOC100039285, Hspd1, LOC100039292, Gabrg2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-399E13.T7 (MSMg01no399_e13.b1)MSMg01-399E13.TJ (MSMg01no399_e13.g1)
ACCAG499184AG499185
length718729
length of high quality
(start - end)
372 (49 - 420)283 (76 - 358)
definitionCHROMAT_FILE: MSMg01no399_e13.b1 PHD_FILE: MSMg01no399_e13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:15 2005CHROMAT_FILE: MSMg01no399_e13.g1 PHD_FILE: MSMg01no399_e13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TGCCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCACAAATCTCCTAACTAAGCAGCTGGTTCTTCTCAAATGCTA
ATGCTCCCAAGTAGCTGAAGTATTATGGAAAGTGCTCATTTGGCCAGGGC
ATCCTCCTCCTGCTAAGCAATCAGCTAAGAGCACTAAAAGACCAAACCAC
AGGCTAAAGGTGAATGTATTTGCAAAAATCCTCAGTGAAGTGCTACGAAA
TGGTATTAACCTCACACTGATGATTATGTACATTGTACTCAGGGGCAATG
AGACTTTCTTTCATTTTTTTTTTTGAAATACTGGAGAAAAAAGAGTTAAT
GTTTACTGGTCTTGAAAAAATGGCTCATGGGAAGTGTTTTAAGGTTTCTC
ATATTAGTCTGGCTGTTACTGCAACCGTAGGATAGGCTTGTAGCATACAT
GAATGATTGGCTGTGCTTTTTTTTCTTCTTCTTTTTTTATTGGGTATTTA
TTTCATTTACATCTCCAATGCTATCCCAAAAGTCCCCCACACGATCCCCC
ATCCACCCATTCCCACTTCTTGGCCCTGTCGTTCCCCTGTATTGAGGCAT
ATAAAGTTTGCACAACTAATGGGCCTCTCTTTCCACTGACGGTCAACTAG
GCCATTTTCTGATTCATATGCAGCTAGAGACACGAGCTCCAGGGGGGTAC
TGGTTAGTTCATATTGTT
CTCGATGCTATGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTACCCCATTTT
TAATAAAGTTATTTGGTTCTCTGGAGTCTGACTTCCTGAGTTCTTTGGCG
ATATTGGATATTATCCCACTATTGGATATAGGATTGGTAAAGATCTTTTC
CCAATTTATTGGTTGCTGTTTTGCCCTGCTGACAGTGTCCTTTGCTTTAA
AGAAGCTTTGCAATTCTATGAGGTCCCATTTGTTGATTCTTGATCTTACA
GCATAAACCATTGGTGCTCTGTTCAGGAACTTTTCTCCTGTGCCTATATG
TTTGAGGTTCTTCCCCACTTTGTCTCTACAAGTTTCAGTGTATCTGGTTT
TATATGGTGGTCCTTGATCCACCTGCACCTTATCCTCTGTACAATATATG
GTCACTTTGCCTTCTTCTACATGCTAACTGCCAGTTAAGCCTGCACCATT
ATTTGAAAATGCTGTATCCTTTCCATTGAATGACTTTAGCCTCTTTGTCG
AATTACTTTTGCCCACAGTGTGCGTGTTTTCCATCCCTGATTCTTCAATT
CTATCCCACTTGATATTCCTGTCCTCCCACTGTACTATCAGTACTCCTGC
AGTTTCCCGCTTATATTTGCTTCTGTTTATACCTGTTTCGACCCCCCGCT
TATGCCCGTTTTCTCTCCCCCCCCCTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no399_e13.b1 MSMg01no399_e13.b1 CHROMAT_FILE:
MSMg01no399_e13.b1 PHD_FILE: MSMg01no399_e13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:12:15 2005
         (372 letters)



>mm_chr11_40928444_40929215
          Length = 772

 Score =  638 bits (330), Expect = 0.0
 Identities = 361/372 (97%), Gaps = 5/372 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccacaaatctcctaactaagcagctggttcttctcaaatgctaatgctcccaagt 64
           |||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gaattccacaaaacacttaactaagcagctggttcttctcaaatgctaatgctcccaagt 261

                                                                       
Query: 65  agctgaagtattatggaaagtgctcatttggccagggcatcctcctcctgctaagcaatc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 agctgaagtattatggaaagtgctcatttggccagggcatcctcctcctgctaagcaatc 321

                                                                       
Query: 125 agctaagagcact--aa-aagaccaaaccacaggctaaaggtgaatgtatttgcaaaaat 181
           |||||||||||||  || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 agctaagagcactacaagaagaccaaaccacaggctaaaggtgaatgtatttgcaaaaat 381

                                                                       
Query: 182 cctcagtgaagtgctacgaaatggtattaacctcacactgatgattatgtacattgtact 241
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 cctcagtgaagtgctaggaaatggtattaacctcacactgatgattatgtacattgtact 441

                                                                       
Query: 242 caggggcaatgagactttctttcatt-tttttttttgaaatactggagaaaaaagagtta 300
           ||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||
Sbjct: 442 caggggcaatgagactttctttctttcttttttttt-aaatactggagaaaaaagagtta 500

                                                                       
Query: 301 atgtttactggtcttgaaaaaatggctcatgggaagtgttttaaggtttctcatattagt 360
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 501 atgtttactggtcttgaaaaaatggctcatgggaagtgttttaatgtttctcatattagt 560

                       
Query: 361 ctggctgttact 372
           ||||||||||||
Sbjct: 561 ctggctgttact 572


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 772
Length adjustment: 9
Effective length of query: 363
Effective length of database: 763
Effective search space:   276969
Effective search space used:   276969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)