BAC Information

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BAC

Clone NameMSMg01-400F09
Chromosome11 (Build37)
Map Location 28,398,286 - 28,398,833
singlet/doubletsinglet
Overlap geneCcdc85a
Upstream geneLOC100042377, EG626571
Downstream geneEfemp1, LOC382504, Pnpt1, A630052C17Rik, Smek2, LOC100042972, Ccdc104, LOC672637, LOC100042985, A430106J12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-400F09.T7 (MSMg01no400_f09.b1)MSMg01-400F09.TJ (MSMg01no400_f09.g1)
ACCAG499984AG499985
length7791,357
length of high quality
(start - end)
548 (71 - 618)---
definitionCHROMAT_FILE: MSMg01no400_f09.b1 PHD_FILE: MSMg01no400_f09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:13:36 2005CHROMAT_FILE: MSMg01no400_f09.g1 PHD_FILE: MSMg01no400_f09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:13:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTATCAAATCTTCCAGGAAGACATAATACCAACTAGGTATTAGAAA
ATACCTAATACCAATTACCTAGCAATTACTCTGGAAACTACCCACATTGT
TGAGTATTGGAAACGGCAGCATGACTAATCTTTTGACTCAAAGTCTCCTT
GGTTGGCGCTCTTAAATTTCTTCTTAGTATATGGCATAGAATGGTGGTGC
ATTCTCTTTAGTTTCTAAGAGGCAATGAATGACTCTTCATCTGAGTTTAA
GTAGGAATGTTTGTAGATCAAACAGGTAGTGAATAAGGGCCACTGCCGAA
TAGATAACAACATGCACAACAAATGATGGGAGAGGCCTTGGGGTTCTGGA
GAAGTTGCTCTGAATGAGATAATATAAACTCATGAATATATGTAGGTTCC
CAGTGAGGCAGTCTGAGTCCATGCCTGGGAGAAGAAGGTATCAGGGAACT
TTCAATAGGTTGTACATAGAGACTGGGCTCTAGCACTCTATGGAGACCTC
CTCTCAGGGGGATAGGTAATGGCACTATCAGGAAAGAGTGGTCCAAACAA
GAGCTACTAAATGCACTAGGCTAGCCTTGGGAGGAGAGTAAACACATGAA
GAGGTTTGTGAACGTGAAGGTGAGATTAGACACTAACATGTCTAATACCT
GTAGAGTGGAATAGCTTATAAAGTAAGAGTGAGATGGCCCATANGCAGTT
TGGCAGGCTGATGTTGATAACCTTGGTCC
TTTTTTGGGTGGGTGNNGNNNAGGTNGNGCTGGTCGTTTTTTTTCCTTGT
TTTCGGGGGTGGTGGTTGGGTGGGTTGGTTTTTCCCGTGTGCTTGTTCGT
GTTTGGGGGCGTGTGGTGTGTGTGTCCCTCACTTCTGGGGGGTGCGTTAC
GGCGGTGGTCTGGCGTGCGCGGGGCGCTGCGTGCGNCTTTGTGGTGACTT
GTGACGGCGGGTGTCGTCGTCGCGACGGGCTGCCTGCGAGTGGTTGTTAG
TCTTCTGCCCTTCTTCGTTTTCTTGGTGTGCTCTTGGGTCGCGTTGGGGC
TTGGTGTGGGCGTNGTGCGGTGGTTGTCGTCTTTTGTCTGTTGCGCTTTA
TGGTCCGTGGTTGCGCGTTTGTTGGTGGTCTGGTGGTTGTCGTTGTGCTG
GCTGGTGCGTGTGCGTCCTCACTTGTCTTTTTGTGTTTTCTGTTTTTTGC
GCGCTTGGTTTTTTTCTGTCTTGGTTTGTTGCGCGGCTTCGGTGGTGGCG
GTGGGTGGTGCCTGTCTGTGTGCGCGTGCTTGTTTGCGCTGGCCGGTCTG
GGTGCGCGTGTGGCGTGTGGGCGTGTGGCTCGGTTTCTCTTGTCGTCTTC
TGTTTTGTCTTCCGCTGTCCTTGCGTTGTGTCTGTGTCTGCGTTGGCTTG
GTGTGTGGGTTGGCGCGTGTGGTGTTGCGTTCTAGTGNTGTTGTCGTTCT
CTCGTGTCTGTGTTGTTGCTGGTTTGTCGTTTCTGGTTGTTGGGTGTGCT
TCTGTGTGTGGTTGGTGCGGTCCGCGGCGGTCGTGTCTTGTGCTCGTTAT
GTTCTCGTTATGTCTCTGTTGTGTTGTATGTGTGTGGTGCTGCTGCTGTG
TGTCGCGTGTGTCCTCTCTGATCTGTTTTTCTTCTTCGCGCTGCTGTCGC
TGATGCTCCGTCGGCTGTCTCGTGTACTGTATTCGGTGTATGCGTGCGTG
CGTCGTGTGTGTGATGTACGGCGCCGGTGTGCTCGGCGTTTCTGTGATTG
TGCTCGCACGCCCTTCTGTGTGCTTGNTCGCTTGCTGTGTTAGTTGTGAT
ATCTGCTCNCGACGCTATCGTTCTTGTGTCGGCGTTGGTTGTGCTGCTCG
GTGTGTCATCTGGTTCTGTGTTGTGTACNCTTGGCGTGTTCGTCTGGTTG
TCTGCTCTGTTGGTGCTTGTCGTTGTGTGTGTCTCTCGCTCTCTCTCAGT
CTCTGCGCTCTGTNTGCGTGTGTAGTTGTGAGCGCGTCGTGAATGTGCGC
GGTGAGCTTCTGTGTCGTGTGCGTGTGCTGTCGCGGTGCGGGCGGCGTGT
GGTGTGGTGTCGCTGCGGCTCGGTGCGCGTCTAGCGCGTGCGGCGGGTGC
GTGCGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no400_f09.b1 MSMg01no400_f09.b1 CHROMAT_FILE:
MSMg01no400_f09.b1 PHD_FILE: MSMg01no400_f09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:36 2005
         (548 letters)



>mm_chr11_28398086_28399033
          Length = 948

 Score = 1023 bits (529), Expect = 0.0
 Identities = 544/549 (99%), Gaps = 2/549 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaagacataataccaactaggtattagaaaatacctaataccaattacctagcaattact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 gaagacataataccaactaggtattagaaaatacctaataccaattacctagcaattact 689

                                                                       
Query: 61  ctggaaactacccacattgttgagtattggaaacggcagcatgactaatcttttgactca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 ctggaaactacccacattgttgagtattggaaacggcagcatgactaatcttttgactca 629

                                                                       
Query: 121 aagtctccttggttggcgctcttaaatttcttcttagtatatggcatagaatggtggtgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 aagtctccttggttggcgctcttaaatttcttcttagtatatggcatagaatggtggtgc 569

                                                                       
Query: 181 attctctttagtttctaagaggcaatgaatgactcttcatctgagtttaagtaggaatgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 attctctttagtttctaagaggcaatgaatgactcttcatctgagtttaagtaggaatgt 509

                                                                       
Query: 241 ttgtagatcaaacaggtagtgaataagggccactgccgaatagataacaacatgcacaac 300
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 508 ttgtagatcaaacaggtagtggataagggccactgccgaatagataacaacatgcacaac 449

                                                                       
Query: 301 aaatgatgggagaggccttggggttctggagaagttgctctgaatgagataatataaact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 aaatgatgggagaggccttggggttctggagaagttgctctgaatgagataatataaact 389

                                                                       
Query: 361 catgaatatatgtaggttcccagtgaggcagtctgagtccatgcctgggagaagaaggta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 catgaatatatgtaggttcccagtgaggcagtctgagtccatgcctgggagaagaaggta 329

                                                                       
Query: 421 tcagggaactttcaataggttgtacatagagactgggctctagcactctatggagacct- 479
           ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || 
Sbjct: 328 tcagggaactttcaataggttgtacatagagactgggctgtagcactctatggaga-ctg 270

                                                                       
Query: 480 cctctcagggggataggtaatggcactatcaggaaagagtggtccaaacaagagctacta 539
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 cctctcagggggttaggtaatggcactatcaggaaagagtggtccaaacaagagctacta 210

                    
Query: 540 aatgcacta 548
           |||||||||
Sbjct: 209 aatgcacta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 948
Length adjustment: 10
Effective length of query: 538
Effective length of database: 938
Effective search space:   504644
Effective search space used:   504644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)