BAC Information

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BAC

Clone NameMSMg01-400N09
Chromosome11 (Build37)
Map Location 87,084,598 - 87,084,843
singlet/doubletsinglet
Overlap genePpm1e
Upstream geneThrap1, 0610013E23Rik, Rps6kb1, Tubd1, LOC100043687, Tmem49, Ptrh2, Cltc, Dhx40, Ypel2, Gdpd1, 1200011M11Rik, LOC668816, Prr11, 1110001A07Rik, Trim37
Downstream geneRad51c, Tex14, Sept4, Mtmr4, Hsf5, Rnf43, Supt4h1, Bzrap1, Mpo, Lpo, Mks1, Epx, Olfr462, Olfr463, Olfr464, Dynll2, Sfrs1, Vezf1, Cuedc1, Mrps23
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-400N09.T7 (MSMg01no400_n09.b1)MSMg01-400N09.TJ (MSMg01no400_n09.g1)
ACCAG500363AG500364
length789785
length of high quality
(start - end)
250 (74 - 323)249 (75 - 323)
definitionCHROMAT_FILE: MSMg01no400_n09.b1 PHD_FILE: MSMg01no400_n09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:14:16 2005CHROMAT_FILE: MSMg01no400_n09.g1 PHD_FILE: MSMg01no400_n09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:14:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGTACATGCGCGGAA
TTCTCCTGGTTTAACAGAACAGTTTTTGAAGGAACTATTTTTAAATAAGC
CTTAAATATACAAGGGGTGAAAAAAAAAAACCCAACCTCCAATACAGTTG
GCAGCTTGAGAAAAGCTTAATTACCCTCCTTCTCTGTAACCATCCAGAGA
AAGCAACCCTGTAACCAGCAGAGTACTCATTACCTGCTGGGAGCCAGCCA
AGTGTATTCCCCACTGCTAAGTTCAGAAAATAAACAAGAAGAAAAGAAAG
AGAGAAAGACAAAGGCATGTGTTCGGTGGGTATAATGAGGTCCAGAAGCA
GGGGGCAAAGGTGGGTCCCCGCCTGACTCCTGACGCTGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGCCCCCCCTTTTTTTTTCTTTCTTCTNTCTCTTC
CCTTTTTCCTGTTTTTTCTTTCTTTCTTTGTTTTCCTTTTCGCTTCTCTC
CCCTCCTGTCCTTTCGTGTTCCTCCTTTCCTCGTTCCTCTTTTTGTGTTC
GTTCTCTGCTCTCCTTTCTCTGCTTCTTCCTTCTCCCTCCGTTTTGTTTT
TTTTCCCCCCCCCGTCTCTCTCGTGTCTCCTCTTTCCTTCTTTTCTTTTT
CTTTCTTCCCCTTCCCTCCCCCCTTTTTTTTTTTTCTCCTTCGGCGCTCT
CCCTCTCTCCTATTATCTTTTCCCTTCCTCTTCCTTTTCATTTGTTTTTA
TTTTCTTATCTCTGTATCCATCACTTCCGCACCTTTTTG
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAGTAGTTAAAGATTTTGCTCAAAGTT
GAATGCCTGCCAAGCAATTTTAAAGTCCTAGGTTTGGTCCTCAGCCTAAA
ACAAACAAACAAACAAACAAACAAACAAACAAACAAACAAACAAGAACAA
TTAATTCGTTGTAGACCAGCCTCAGTTACATGGCTACTTAAGACTCTTGG
AGTGGGGAATACATTTATAAAGATATATATATATATATATATGAATTAGT
ATTTTGACTAAGCCCTCTATGGTCTTATTTGTCACCTGTGGCTGGGTGCA
CACTTGCTTTACAGCTTTACAGTTGATGGAAGCATTGGGGCTGAATGGGA
AAGGTTGCTAACATTTTTTTTTTCAAGACAAGGTTTCTCTGTGAGACCCT
AGCTGTATGGGAACTCACTCTGTAGCCCAGGCTGGTCTCAAACTCAAGGA
TCCACCTGTCTCTGCCTCCCAAGTGCTGGGATTAAAGGTGTGCGCCATCA
CACCTGACCTCTTTAACAATTTTTACTACATGCTTCCTCCTAAGTGGGTT
TGGGGTTTTTGTTGTTGTTCTTGTATTGGGGCCTGTTTCCATGATTCCCA
GCACATTGCATAGTTATGTTTTTATGTAAGGTAACAGGGTCCCTAGGGTA
ATAAAGAAAAGAAATGCCTATGGCCGCTGCCAGAGGGCCCCCTTTATTTT
ACGAAGGTGGGTTGGTTTTGGTTCCATGTTAAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no400_n09.b1 MSMg01no400_n09.b1 CHROMAT_FILE:
MSMg01no400_n09.b1 PHD_FILE: MSMg01no400_n09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:14:16 2005
         (250 letters)



>mm_chr11_87084398_87085045
          Length = 648

 Score =  443 bits (229), Expect = e-129
 Identities = 243/249 (97%), Gaps = 4/249 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttttgaaggaactattttt-aaataagccttaaatatacaaggggtgaaaaaaaaaaacc 59
           ||||||||||||||||||| |||||||||||||||||||||||||   ||||||||||||
Sbjct: 446 ttttgaaggaactatttttaaaataagccttaaatatacaagggg---aaaaaaaaaacc 390

                                                                       
Query: 60  caacctccaatacagttggcagcttgagaaaagcttaattaccctccttctctgtaacca 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 caacctccaatacagttggcagcttgagaaaagcttaattaccctccttctctgtaacca 330

                                                                       
Query: 120 tccagagaaagcaaccctgtaaccagcagagtactcattacctgctgggagccagccaag 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 tccagagaaagcaaccctgtaaccagcagagtactcattacctgctgggagccagccaag 270

                                                                       
Query: 180 tgtattccccactgctaagttcagaaaataaacaagaagaaaagaaagagagaaagacaa 239
           || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 tggagtccccactgctaagttcagaaaataaacaagaagaaaagaaagagagaaagacaa 210

                    
Query: 240 aggcatgtg 248
           |||||||||
Sbjct: 209 aggcatgtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 648
Length adjustment: 9
Effective length of query: 241
Effective length of database: 639
Effective search space:   153999
Effective search space used:   153999
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)