BAC Information

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BAC

Clone NameMSMg01-401C19
Chromosome11 (Build37)
Map Location 75,121,569 - 75,122,059
singlet/doubletsinglet
Overlap geneRpa1
Upstream geneOlfr409-ps1, LOC193079, Olfr410, Olfr411, Olfr412, Garnl4, E130309D14Rik, 1300001I01Rik, Pafah1b1, Mett10d, Mnt, Rutbc1, Tsr1, Srr, LOC100042478, Smg6, LOC100043429, LOC627835, Hic1, LOC668604, Ovca2, Dph1, Rtn4rl1
Downstream geneSmyd4, Serpinf1, LOC100043447, Serpinf2, Wdr81, LOC100042498, 2010305C02Rik, Prpf8, Rilp, Scarf1, Slc43a2, Pitpna, LOC654359, Pps, Myo1c, Crk, Ywhae, Doc2b, Rph3al, 1700016K19Rik, 1500005K14Rik, Vps53, LOC668634, 2310047D13Rik, Gemin4, Dbil5, Glod4, Rnmtl1, Nxn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-401C19.T7 (MSMg01no401_c19.b1)MSMg01-401C19.TJ (MSMg01no401_c19.g1)
ACCAG500622AG500623
length768781
length of high quality
(start - end)
527 (73 - 599)491 (74 - 564)
definitionCHROMAT_FILE: MSMg01no401_c19.b1 PHD_FILE: MSMg01no401_c19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:14:44 2005CHROMAT_FILE: MSMg01no401_c19.g1 PHD_FILE: MSMg01no401_c19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:14:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTATCXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGAATCCGCGGA
ATTCANAGCCATTTCGGTGTACATAGCAAGTGTACATGCAGGAAAAATAG
CCATATATGCAATAAAAATAAATGTTTTCATGTGCATATTCTGGCGTTGG
AGAGATGTCTCAGCAGCTAGGAGTGCTTACTATTCTTACAGAAGATCCTG
TCTTGGTCCATATGACTATTCATAACCATCTGTATCTCCAATTCCAAGAG
ATCCAATGCTCTCTTCTAGCATTGTCAGGTACCAAGGCACATGTGTGGTG
GGTATATACCTGCCATCCTTATATTCTTACACATAAAATAAAAAGATAAA
TACAGTTCATAAAAAGTGCATATTCCAAGATCTTTACTTCAGGAATACTA
ATTAATTTAGTGTTGTGTAGACCAGGCTGGCCCCAAACTCACAGAGATCT
GTCTGTCTCAGTTTCCCAAGCACATATGCTACCACACCTGGCTACCTTGT
TTATACCTTATCCCAAATTTTTTTGTTGTTTTTTTTCGAGACAGGGTTTC
TCTGTGAAGCCCTGGCTGTCCTGGAACCCACTTTGTAGACCAGGCTGGTC
CAGAAATCCGCCTGCCTCTGCCTCTTCAGTGCTGAGATTAAAGGCGTGTG
CCACCACCACTCGACTTTATTCCAAACTTATGACAGACCTTTTTTATCAT
ATTGCACCTTCCTTTCTAATTGCCCGAACCCTTATTTTTTATTTAAATCC
TGGACCTCACCTTTATAT
GAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGGCTAGATCTGGATTTTGTAGGTACT
TGACATGATTGAACATAAACCAAAACCTGTGCAGGGTTCAGAGGCAAAGC
AGGTATCCACCCCTTACGTGACTTAGCTCCTTGCTGGGTTACTTAACCAG
ACATTTTTCCATTTAGAAGATCTTAGTCATGGGTAATTCTGCATTCTCTT
AAACGCATTCAGTCCAAGAATTGCCTGTCAAGCCTGTGAGCTGGCTGGCT
GTGACTGTCAGTAAGATTTTATTGTCTCACCTTCCGTCTTCAGGTTGTCT
GTGGCTTGTCCTGCCCCACAGACAGGTTGAGGAGTGGCAGTAGAGACTGA
CTGATTGGCTCATTGGGCCTAAAAGGTTTTTCTGGCTTGTCTTGGGGAAA
AACTTACTGATCCCTAAAGATAAGGGTAGACATCACCATCTTGTAAATAA
TGCTTGGCCAGCAAGGGAACTCAGTGAGTAAAGGCACTGCCACCGAGCCT
GACAGCCTGAGTTCCTCTCCCTCACTCACATGGTGAGGGGAGATCACCAA
CTCCCACAGGTTGTTTCCTAGCCTGCACATGCACGTTGTGGTTTATATGA
CTACATGCATATTACCTGTGTGGTACCCTGATCTTTTCATGTCAGTGTTC
AAAATAACTCTTCTGGTCTATTCCCTTTTTCCCGGCTATTCTGGGAATCC
TTGGGCCCCCCCTTTCCCTTTTATTAGTTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no401_c19.g1 MSMg01no401_c19.g1 CHROMAT_FILE:
MSMg01no401_c19.g1 PHD_FILE: MSMg01no401_c19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:14:44 2005
         (491 letters)



>mm_chr11_75121428_75122318
          Length = 891

 Score =  903 bits (467), Expect = 0.0
 Identities = 485/491 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggctagatctggattttgtaggtacttgacatgattgaacataaaccaaaacctgtgca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 aggctagatctggattttgtaggtacttgacatgattgaacataaaccaaaacctgtgca 573

                                                                       
Query: 61  gggttcagaggcaaagcaggtatccaccccttacgtgacttagctccttgctgggttact 120
           |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 572 gggttcagaggcaaagcaggtatccaccgcttgcgtgacttagctccttgctgggttact 513

                                                                       
Query: 121 taaccagacatttttccatttagaagatcttagtcatgggtaattctgcattctcttaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 taaccagacatttttccatttagaagatcttagtcatgggtaattctgcattctcttaaa 453

                                                                       
Query: 181 cgcattcagtccaagaattgcctgtcaagcctgtgagctggctggctgtgactgtcagta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 452 cgcattcagtccaagaattgcctgtcaagcctgtgagctggctggctgttactgtcagta 393

                                                                       
Query: 241 agattttattgtctcaccttccgtcttcaggttgtctgtggcttgtcctgccccacagac 300
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 agattttattggctcaccttccgtcttcaggttgtctgtggcttgtcctgccccacagac 333

                                                                       
Query: 301 aggttgaggagtggcagtagagactgactgattggctcattgggcctaaaaggtttttct 360
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 332 aggttgaggagtggcagtagagactgactgaatggctcattgggcctaaaaggtttttct 273

                                                                       
Query: 361 ggcttgtcttggggaaaaacttactgatccctaaagataagggtagacatcaccatcttg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 272 ggcttgtcttggggaaaaacttactgatccctaaagataagggtagacatcaccatctta 213

                                                                       
Query: 421 taaataatgcttggccagcaagggaactcagtgagtaaaggcactgccaccgagcctgac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 taaataatgcttggccagcaagggaactcagtgagtaaaggcactgccaccgagcctgac 153

                      
Query: 481 agcctgagttc 491
           |||||||||||
Sbjct: 152 agcctgagttc 142


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 891
Length adjustment: 10
Effective length of query: 481
Effective length of database: 881
Effective search space:   423761
Effective search space used:   423761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)