BAC Information

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BAC

Clone NameMSMg01-401G22
Chromosome11 (Build37)
Map Location 111,615,760 - 111,791,914
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041523, Kcnj16, Kcnj2, LOC667003, LOC100041539, LOC100041559, EG629966, LOC629967
Downstream geneLOC100041589, LOC100043020, EG668396, EG667038, LOC100041610, LOC671963, LOC667047, BC006965, Sox9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-401G22.T7 (MSMg01no401_g22.b1)MSMg01-401G22.TJ (MSMg01no401_g22.g1)
ACCAG500820AG500821
length822783
length of high quality
(start - end)		402 (48 - 449)460 (79 - 538)
definitionCHROMAT_FILE: MSMg01no401_g22.b1 PHD_FILE: MSMg01no401_g22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:03 2005CHROMAT_FILE: MSMg01no401_g22.g1 PHD_FILE: MSMg01no401_g22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,615,760 - 111,616,154)(111,791,603 - 111,791,914)
sequence
NNTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTTGGCTCTCCTCTGGGACAAGTCAGAAGCATCCACACAGAAG
CCTCTTAGCCATCCTGCCTATAAACAAGAGGGATTCTTTATCAAAATATA
CTTAAATAACATTTGACAACTTTTGAAAAATTTCATTTCTGCAAAGTTTA
CAGTGCCTCCTCACTCCTCATAAGCATATAAAGGCATTGTTTCTATTTTT
CTCTCTAGCGGTGAACTAACTAATATATATTACAAGCAAACTTTATTGTT
TTATTTTCAATAATTTTATGTTAACATTCAATTTATCTGTCAGTCTTTTG
AGCATGTCTCCGCTGCATAGCTTTGTGTTCCTTATTGAATGGTATGAAAT
GTGTGTGTGTGCCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGN
CANNNNNNNNTTCTCTNTTTTCTTTNTTTTTCTCTTTCCCTCCCTTTCCC
CCCCTCTTCGTTTCCCCGCCCTTTTCTCCCTTTTTTGCTCCCCCGTTCTT
CTGTTGGTCCCTTCTTTTGCCTTCTCCCCTTTTCTTCCCCTTTTCTTTCC
TCCCCTTTTTCTCCCCTTTTCTTTCCTTCTCCCTTCTTTTCCTTCCCTTG
CTCTCCTTCCCTTCTTCCTCCTTCCTTCTCCTTCCCTCCCTCTCCTTTTT
CTCCTGCTCTTTCCCCCCCCTTCCTTTTTTCTCTCCCTCCCCCTTTTTTT
TTCCCTCCTTTCTCTCCCCTCCCCCCTTTTTTTTCCCTTTTCCTTTCTTC
TCTTTCCCCTTCTCCTTTCTCT

NNCCGATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXACATGCCACACAGACACACATG
CAGACAAAACACATGTAAATATAAAATTGCTGCATTTTAAAACATATAGA
AAATAAATAAAAAGAAATGTTTTCTGTCTAATTTGTTCCCTATTTTTATT
TTTTATTTTTATTTTTTGGTTTTTTGAGTTTTCCAGACAGGATTTCTCTG
TGTAGCCCCGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCTTCGA
ACTCAGAAATTCACCTGCCTCTGCTCCCTTTTGATGAGGACTAAAGGCTT
GTACCACCACTGCCCATTATTTTGATTTTTTAAAATATATTTTAAATTTT
ATTTTTGAGATCACGTCTCTCTTTGCTCCGCTCCTTCCAAACTCTCCCAT
GTACAATCCCACCTGCCTTATCTTTCAAATTCATGCCCTGTTTTTCCTTA
ATTTCTGGTAAAAATGTGTGTGTGTGTGTGTGTGTGTGTGTGNNTNNNNN
NNNNNNNNNNNNNTTNNNTTTTNNTTNTTTTTTTTTTTTTTTTTTTTTNT
TNTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTNTTTNTNNNNNTTNTNTT
TTNTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTNTNNTTTTTT
TTTTTTTTTTTTNNTTTTTTTTTTTTTTTNTTTTTTTTTTTTTNTTTTTT
TTTTTTTNTTTTTTNTNTTTTTTTTTTTTNNTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no401_g22.b1 MSMg01no401_g22.b1 CHROMAT_FILE:
MSMg01no401_g22.b1 PHD_FILE: MSMg01no401_g22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:03 2005
         (402 letters)



>mm_chr11_111615556_111616357
          Length = 802

 Score =  741 bits (383), Expect = 0.0
 Identities = 392/395 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttggctctcctctgggacaagtcagaagcatccacacagaagcctcttagcca 64
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 205 gaattctttggctctcctctgggacaagtcagaagcgtccacacagaagcctcttagcca 264

                                                                       
Query: 65  tcctgcctataaacaagagggattctttatcaaaatatacttaaataacatttgacaact 124
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcctgcctgtaaacaagagggattctttatcaaaatatacttaaataacatttgacaact 324

                                                                       
Query: 125 tttgaaaaatttcatttctgcaaagtttacagtgcctcctcactcctcataagcatataa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tttgaaaaatttcatttctgcaaagtttacagtgcctcctcactcctcataagcatataa 384

                                                                       
Query: 185 aggcattgtttctatttttctctctagcggtgaactaactaatatatattacaagcaaac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aggcattgtttctatttttctctctagcggtgaactaactaatatatattacaagcaaac 444

                                                                       
Query: 245 tttattgttttattttcaataattttatgttaacattcaatttatctgtcagtcttttga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tttattgttttattttcaataattttatgttaacattcaatttatctgtcagtcttttga 504

                                                                       
Query: 305 gcatgtctccgctgcatagctttgtgttccttattgaatggtatgaaatgtgtgtgtgtg 364
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gcatgtctcagctgcatagctttgtgttccttattgaatggtatgaaatgtgtgtgtgtg 564

                                              
Query: 365 cctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 399
           |||||||||||||||||||||||||||||||||||
Sbjct: 565 cctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 599


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 402
Length of database: 802
Length adjustment: 9
Effective length of query: 393
Effective length of database: 793
Effective search space:   311649
Effective search space used:   311649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no401_g22.g1 MSMg01no401_g22.g1 CHROMAT_FILE:
MSMg01no401_g22.g1 PHD_FILE: MSMg01no401_g22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:03 2005
         (460 letters)



>mm_chr11_111791603_111792462
          Length = 860

 Score =  542 bits (280), Expect = e-158
 Identities = 304/312 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   acatgccacacagacacacatgcagacaaaacacatgtaaatataaaattgctgcatttt 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 312 acatgccacacagacacacatgcagacaaaacacacgtaaatataaaattgctgcatttt 253

                                                                       
Query: 61  aaaacatatagaaaataaataaaaagaaatgttttctgtctaatttgttccctattttta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 aaaacatatagaaaataaataaaaagaaatgttttctgtctaatttgttccctattttta 193

                                                                       
Query: 121 ttttttatttttattttttggttttttgagttttccagacaggatttctctgtgtagccc 180
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 gtttttatttttattttttggttttttgagttttccagacaggatttctctgtgtagccc 133

                                                                       
Query: 181 cggctgtcctggaactcactctgtagaccaggctggcttcgaactcagaaattcacctgc 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 132 cggctgtcctggaactcactctgtagaccaggctggcttcgaactcagaaatccgcctgc 73

                                                                       
Query: 241 ctctgctcccttttgatgaggactaaaggcttgtaccaccactgcccattattttgattt 300
           ||||||||||   ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 72  ctctgctcccaagtgatggggactaaaggcttgtaccaccactgcccattattttgattt 13

                       
Query: 301 tttaaaatatat 312
           ||||||||||||
Sbjct: 12  tttaaaatatat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 860
Length adjustment: 10
Effective length of query: 450
Effective length of database: 850
Effective search space:   382500
Effective search space used:   382500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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