Query= MSMg01no401_k21.b1 MSMg01no401_k21.b1 CHROMAT_FILE:
MSMg01no401_k21.b1 PHD_FILE: MSMg01no401_k21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:22 2005
(204 letters)
>mm_chr11_83225801_83226404
Length = 604
Score = 387 bits (200), Expect = e-112
Identities = 203/204 (99%)
Strand = Plus / Minus
Query: 1 ctcgttgtataagaattggcgcacgatggcactcttgcccacacctcgagcccccagcac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 ctcgttgtataagaattggcgcacgatggcactcttgcccacacctcgagcccccagcac 345
Query: 61 ggccacccggtaggtggagaccatgcctcccgccccactccgccaccgcgtccttgcctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 ggccacccggtaggtggagaccatgcctcccgccccactccgccaccgcgtccttgcctg 285
Query: 121 gggctcctccgggctgcatattccaggggctgggggctcagccaccgtcaggaccaacca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 284 gggctcctccgggctgcatattccaggggctgggggctcagccaccgtcaggaacaacca 225
Query: 181 ttgctccctctgcttgcctctggc 204
||||||||||||||||||||||||
Sbjct: 224 ttgctccctctgcttgcctctggc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 204
Length of database: 604
Length adjustment: 8
Effective length of query: 196
Effective length of database: 596
Effective search space: 116816
Effective search space used: 116816
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no401_k21.g1 MSMg01no401_k21.g1 CHROMAT_FILE:
MSMg01no401_k21.g1 PHD_FILE: MSMg01no401_k21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:22 2005
(480 letters)
>mm_chr11_82996845_82997726
Length = 882
Score = 866 bits (448), Expect = 0.0
Identities = 473/482 (98%), Gaps = 3/482 (0%)
Strand = Plus / Plus
Query: 1 cattcttccttatggctgagtaaaccctgagtttggactaagcatgtagggagtttaatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cattcttccttatggctgagtaaaccctgagtttggactaagcatgtagggagtttaatt 260
Query: 61 gtgcacatgctatgttttcctcatccactcacccgctgataggaccctttgctcgttcac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgcacatgctatgttttcctcatccactcacccgctgataggaccctttgctcgttcac 320
Query: 121 aaactcagttgttgtgaacaggaagacaactcacctgagtgtacaggtgtgtgtccttta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaactcagttgttgtgaacaggaagacaactcacctgagtgtacaggtgtgtgtccttta 380
Query: 181 gggttgcctagatgcttaaggacaaatgcctaggagtgtaacttcagtgttttttttt-- 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggttgcctagatgcttaaggacaaatgcctaggagtgtaacttcagtgttttttttttt 440
Query: 239 aaatcataatatattatcttttgtttattcttggaaattttcatttttgtaacaatgtat 298
||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 441 aaatcataatagaatatcttttgtttattcttggaaaatttcatttttgtaacaatgtat 500
Query: 299 cctggtctcatgcacttccattcccttcaaccattccctaaatgcacttctagcccctgc 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cctggtctcatgcacttccattcccttcaaccattccctaaatgcacttctagcccctgc 560
Query: 359 ccattgctctctccagttaattaattgattaattatgacccactgaatccagttaatgct 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccattgctctctccagttaattaattgattaattatgacccactgaatccagttaatgct 620
Query: 419 gcctgttggaatggtgaatgacccttttggctgagcatgggcaggtaatgccactacagg 478
||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||
Sbjct: 621 gcctgttggaatggtgaatgaccaatt-ggctgagcatgggcaggtaatgccactatagg 679
Query: 479 aa 480
||
Sbjct: 680 aa 681
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 882
Length adjustment: 10
Effective length of query: 470
Effective length of database: 872
Effective search space: 409840
Effective search space used: 409840
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
