BAC Information

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BAC

Clone NameMSMg01-401P02
Chromosome11 (Build37)
Map Location 73,702,273 - 73,702,843
singlet/doubletsinglet
Overlap genenone
Upstream geneZzef1, Atp2a3, P2rx1, LOC100043309, Camkk1, 1200014J11Rik, Itgae, Gsg2, P2rx5, Tmem93, Tax1bp3, Ctns, Carkl, Trpv1, Trpv3, Aspa, Spata22, Olfr20, Olfr376, Olfr377-ps1, Olfr1, Olfr75-ps1, Olfr378, Olfr379-ps1, Olfr380, Olfr381, Olfr382, Olfr383-ps1, Olfr385, Olfr386, Olfr387-ps1, 1700012C15Rik, Olfr388-ps1, Olfr389, Olfr390, Olfr391-ps1, Olfr392, Olfr393, Olfr394
Downstream geneOlfr395, Olfr396-ps1, Olfr23, Olfr22-ps1, Olfr397, Olfr398, Olfr139, Olfr399, OTTMUSG00000006163, LOC668567, Olfr400-ps1, Olfr401, Olfr402, Olfr403, Olfr43, Olfr404-ps1, Olfr405-ps1, Olfr406, Olfr407-ps1, Olfr59, Olfr408-ps1, Olfr409-ps1, LOC193079, Olfr410, Olfr411, Olfr412, Garnl4, E130309D14Rik, 1300001I01Rik, Pafah1b1, Mett10d, Mnt, Rutbc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-401P02.T7 (MSMg01no401_p02.b1)MSMg01-401P02.TJ (MSMg01no401_p02.g1)
ACCAG501208AG501209
length744741
length of high quality
(start - end)
195 (131 - 325)575 (90 - 664)
definitionCHROMAT_FILE: MSMg01no401_p02.b1 PHD_FILE: MSMg01no401_p02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:41 2005CHROMAT_FILE: MSMg01no401_p02.g1 PHD_FILE: MSMg01no401_p02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXGTGCGTACCGGGG
CGCGGAATTCTCACCTTTCCCAAAACGAGAGGGCTGAGAAGCACCTGAAA
AAATGTTCAGCATCCTTAATCATTAGGGCAATGCAAATCAAAACAACCCT
GAGATTCCACCTCACACCTGTCAGAATAGCTAAGATCAAAAATTCAGGTG
ACAGTAGATGCTGGCGAGGATTTGGAGAAAGAGGAACACTCCTCCATTGT
TGGTGTGTATTGCAAGCTTTTACAACCACTCTGGAAATCAGTCTGGCAGT
TCCTCAGAAAAGTGGACATAGTACTACTGGTTGATCCCACAATACCTCTC
CTGGGCATATATCCAGAATATGTTCCAACCGGTAAGAAGGACACATGCTC
CACTATGTTCATAGAAGCCTTATTTATAATAGCCAGAAGCTGGAAAAAAC
CCAGATGTCCCTCAACAGAGGAATGGATATAGAAAATCAGGAATGGTACA
TATACACAGTGAAATACTACTCAGCTATTAAAAAGAATGAATTTATGAAA
TTCCTAAGCAAATGTATGGACCTAGAGGGCATCATCCTGAGTATGGTAAT
CCCATCACAAAAGAACTCACATAACATGTACTCAGTGACAAGTGGATATT
ACCCCAGAAACTTTTTTTTCTCTCGATTCAATTTCGCAAAACTTCTGTTA
CTCTCTAAGAATGATCATCTATGTGCGTAACCTTTTGTCCCCTT
TTCCTCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTACCAGAAGAATTCCACAGGGNAAACGAAGCAT
GACGAAGAAGAGTCAGGAGACATCAGAATATGAACATGAACTAAGTGTGC
TTCTGCATTCGGTAATGATAAGATATGATCCTCATATACTAATATAATCT
CACATAGAGGAATATATGAAATAGGCCAATGGAGGAGTAACTGAATAATG
CATGACATTTGTTCAGTGTATGAAAAAGAATGAATGGATTAAAATTCACA
TAGCTCTGACTTAAAACTGAACTTGNTTCNTTTAACTCTATCAGACTGGA
GAGGTGGAAGAGTGAGAAATACTTCGGGAGACAATAAAATGCAGAGACGA
ATTTCACTTGGGGTTTTTGAGCTTCTGATACCTGTCACACAAGCAAAAAA
TAGAAGATGATTATTTAACAGTGGAGCAGAAATACATGTTACAGGGACAT
GTAAGTGTGAATTTGAAATGGTAATATAACACATTGGAGCATGTGAGATT
TTCTTGGAATTTGTATAAAATTATGATGATAAATCTTATACAAATTCTTC
AAGAACATCAATATACAAAATAACATAGAATGAAATGTAAATAAACAATC
TAGTTACCCAGGGTGAGCAGGAAATAGGAGAGAATATCACTAGTCCATTT
TGGAACTTTATAGAAATGGCATAGAAGCATCTTGGAAATGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no401_p02.g1 MSMg01no401_p02.g1 CHROMAT_FILE:
MSMg01no401_p02.g1 PHD_FILE: MSMg01no401_p02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:41 2005
         (575 letters)



>mm_chr11_73702069_73703043
          Length = 975

 Score = 1015 bits (525), Expect = 0.0
 Identities = 560/572 (97%), Gaps = 2/572 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaagcatgacgaagaagagtcaggagacatcagaatatgaacatgaactaagtgtgcttc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 775 gaagcatgacgaagaagagtcaggagacatcagaatatgaacatgaactaagtctgcttc 716

                                                                       
Query: 65  tgcattcggtaatgataagatatgatcctcatatactaatataatctcacatagaggaat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 tgcattcggtaatgataagatatgatcctcatatactaatataatctcacatagaggaat 656

                                                                       
Query: 125 atatgaaataggccaatggaggagtaactgaataatgcatgacatttgttcagtgtatga 184
           | |||||||||||||||||||||||||||||||| |||||||||   |||||||||||||
Sbjct: 655 agatgaaataggccaatggaggagtaactgaatagtgcatgacagcagttcagtgtatga 596

                                                                       
Query: 185 aaaagaatgaatggattaaaattcacatagctctgacttaaaactgaacttgntt-cntt 243
           ||||||||||||| |||||||||||||||||||||||||||||||||||||| || | ||
Sbjct: 595 aaaagaatgaatgaattaaaattcacatagctctgacttaaaactgaacttg-ttccttt 537

                                                                       
Query: 244 taactctatcagactggagaggtggaagagtgagaaatacttcgggagacaataaaatgc 303
           ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 536 taactctatcagactggagaggtggaagaatgagaaatacttcgggatacaataaaatgc 477

                                                                       
Query: 304 agagacgaatttcacttggggtttttgagcttctgatacctgtcacacaagcaaaaaata 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 agagacgaatttcacttggggtttttgagcttctgatacctgtcacacaagcaaaaaata 417

                                                                       
Query: 364 gaagatgattatttaacagtggagcagaaatacatgttacagggacatgtaagtgtgaat 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 gaagatgattatttaacagtggagcagaaatacatgttacagggacatgtaagtgtgaat 357

                                                                       
Query: 424 ttgaaatggtaatataacacattggagcatgtgagattttcttggaatttgtataaaatt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 ttgaaatggtaatataacacattggagcatgtgagattttcttggaatttgtataaaatt 297

                                                                       
Query: 484 atgatgataaatcttatacaaattcttcaagaacatcaatatacaaaataacatagaatg 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 atgatgataaatcttatacaaattcttcaagaacatcaatatacaaaataacatagaatg 237

                                           
Query: 544 aaatgtaaataaacaatctagttacccagggt 575
           ||||||||||||||||||||||||||||||||
Sbjct: 236 aaatgtaaataaacaatctagttacccagggt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 975
Length adjustment: 10
Effective length of query: 565
Effective length of database: 965
Effective search space:   545225
Effective search space used:   545225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)