Query= MSMg01no402_c23.b1 MSMg01no402_c23.b1 CHROMAT_FILE:
MSMg01no402_c23.b1 PHD_FILE: MSMg01no402_c23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:16:00 2005
(539 letters)
>mm_chr11_98260686_98261624
Length = 939
Score = 971 bits (502), Expect = 0.0
Identities = 527/536 (98%), Gaps = 4/536 (0%)
Strand = Plus / Plus
Query: 6 ggaattctgctctgttaccttacagacggtgtgaccttgggcaaggtacttagtctctct 65
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 ggaattctgctctgccactttacagacggtgtgaccttgggcaaggtacttagtctctct 265
Query: 66 gagtgttctcatctttaaagcggattagggaaagtatctgacggggttgtggtgaaagcc 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gagtgttctcatctttaaagcggattagggaaagtatctgacggggttgtggtgaaagcc 325
Query: 126 agctgacctgctgtgacacccgtccaacgtgggtgctcaatatgttggttgacatcaatt 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 agctgacctgctgtgacacccgtccaacgtgggtgctcaatatgttggttgacatcaatt 385
Query: 186 ccatcctgtttaaattgttctgtggttgatc--cctgcctccacccactgaagctgactc 243
||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 386 ccatcctgtttaaattgttctgtggttgaacaccctgcctccacccactgaagctgactc 445
Query: 244 cgtccctttcacttccaaatgcgtatagtgcttatacctatgggcccattaggtctcaaa 303
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 446 cgtccctttcacttccaaatgcgtatagtgctta-acctatgggcccattaggtctcaaa 504
Query: 304 ctattctgtcttggagaaggctaatgttcacctgcctggggattataagcccagaagggc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctattctgtcttggagaaggctaatgttcacctgcctggggattataagcccagaagggc 564
Query: 364 aggctcctggtctgcttcctgggttacttcaggtcttctttgtatttaaaaagtagtggt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aggctcctggtctgcttcctgggttacttcaggtcttctttgtatttaaaaagtagtggt 624
Query: 424 ttgaataaataacatgaagcctctggaaaggtggggtaggctgatgcaatagcccccccc 483
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttgaataaataacatgaaacctctggaaaggtggggtaggctgatgcaatagcccccccc 684
Query: 484 cccaccttcccacccctccacacacactcaggaggctcctgacattaacactcttg 539
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 cc-accttcccacccctccacacacactcaggaggctcctgacattaacactcttg 739
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space: 491441
Effective search space used: 491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no402_c23.g1 MSMg01no402_c23.g1 CHROMAT_FILE:
MSMg01no402_c23.g1 PHD_FILE: MSMg01no402_c23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:16:00 2005
(476 letters)
>mm_chr11_98384553_98385428
Length = 876
Score = 851 bits (440), Expect = 0.0
Identities = 467/476 (98%)
Strand = Plus / Minus
Query: 1 aaggcttgtctaaaccacaaagcaaagcaagtttcaggccaacctgggctacatagtcac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 aaggcttgtctaaaccacaaagcaaagcaagtttcaggccaacctgggctacatagtcac 674
Query: 61 agtctgagaacaatatatatcattcactgtgagtgttagaggtgaaatcactaggatgag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 agtctgagaacaatatatatcattcactgtgagtgttagaggtgaaatcactaggatgag 614
Query: 121 aaagaccagtgtcaagggaggtgtgggaaatatggaaatatctaacgtacttgtaatcga 180
||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 613 aaagagcagtgtcaagggaggtgtgggaaatttggaaatatctaacgtacttgtaatcga 554
Query: 181 agtcctagaagaaaaacagaacagcagagaggtatgtggagagctgccttcgagaacatt 240
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct: 553 agtcctagaagaaaaacagaacatcagagaggtatgtggagagctgccctcgagaacatt 494
Query: 241 ttggtttgttaaaagccctcactttattgaagagttcaagtaggagaatgcaaataaaag 300
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 ttggtttgttgaaagccctcactttattgaagagttcaagtaggagaatgcaaataaaag 434
Query: 301 tcctgtcgtggtcaacggctgtaagtcaaggtaaagggaggatattcaaagaagtactga 360
||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 433 tcctgtcgtggtcaatggctgtaagtcaaggtaaaggggggatattcaaagaagtactga 374
Query: 361 aaaaagaacaggagcaagaatataccaccgactcttccccggaaactgtagaatccagaa 420
||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 373 aaaaagaacagaagcaagaatataccaccgactcttcaccggaaactgtagaatccagaa 314
Query: 421 ttcatgctgtctttaaggggatagaagaaggggggcggaggggtggggtgaaaaac 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 ttcatgctgtctttaaggggatagaagaaggggggcggaggggtggggtgaaaaac 258
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 876
Length adjustment: 10
Effective length of query: 466
Effective length of database: 866
Effective search space: 403556
Effective search space used: 403556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
