BAC Information

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BAC

Clone NameMSMg01-402F04
Chromosome11 (Build37)
Map Location 25,376,952 - 25,377,362
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042282
Downstream gene5730522E02Rik, LOC100042328, LOC100042345, Fancl, Vrk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-402F04.T7 (MSMg01no402_f04.b1)MSMg01-402F04.TJ (MSMg01no402_f04.g1)
ACCAG501497AG501498
length752747
length of high quality
(start - end)
464 (72 - 535)514 (73 - 586)
definitionCHROMAT_FILE: MSMg01no402_f04.b1 PHD_FILE: MSMg01no402_f04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:16:10 2005CHROMAT_FILE: MSMg01no402_f04.g1 PHD_FILE: MSMg01no402_f04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:16:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGA
ATTCTCATATTGTATCGCTGAGAAACACGTGAAGAAATGTTCATCATCCT
TAGTCATCAGGGATATGCAAATCACACCAGTCAGAATGGATAAGATCAAA
AATTCAGGTGACAGCAGATGTTAGCAAGGATGTAGAGAAAGAGGATTATT
CCTCCATTGCTGGTGGGATTGCAAACTGGAAATAAGTATGGCGGTTCCTC
ATAAAATTGGACATAGTACTACCTGAGGCTCCAGCAATACCACTTCTAGG
CACATATGCTGAAGATGTTTTATATGTAATAAGGGCACATGCTCCATTAT
GTTCATAGCAGCCTTAGTTATAATAGCCAGAAGCTGGAAAGAACCCAGAT
GTCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAATG
GAGTACTACTCAGTTATTAAAAACAATGAATTTATGAAATTCTTAGGCAA
ATAGCTGGAACTAGAAAATATCATCCCGAGTGAGGTAACACAATCACAAA
AGAACACACATGGTATGCACTCACTGATAAGGGGATATTAGTTCAGAAGC
TCAGAATACCCAAGATACAGATTACATGAAGCTCAAGAAGAAGGAAGACC
AAAGTGTGGATATTTTGGTTCTTCTTACAAAGGGGAAAGAAATATCCCTT
TGAACGAAATTAAGTGTGGAGCAAAGACTGTAGGAAAACCCCTTCCTTAA
AT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCTCCTCTATTTCTTCTTGCCTTGTGTT
AGTTTGCCTTGCCTCTGAGTTTCCTCTTTGAGTTCCTCAATTTCTCATTT
CCAGCATCACCTCCATTTGGGTTCTCTTTGCAGTCTATATCCACTTTCAG
ATCTTGAACTATTTAACTCATTTCCTGTTATGCTTTTTAATGTCCACATA
GATGTCTTTAACGCATTTATTTATTCATTTCTTCTCTAAAGACCCTATCA
TACTTGTAAAGGCTAGGTTAGGGTCCTTATCTTGTTTTGCAACTATGCTG
CATTTCTCAGGGCATGCTGTGGTAGTAGAACAGGCCTCACTCTCTTATTA
CACAATGAAACTAACTTTTTTTTTTCTTTTTTGCTTCATCTGTGTTTTCA
CATTGTTCAGTGTGAAGTTTGGTCATGTATAGAATCCTGTGGCTGAGAAT
CATTTTTTTTTATTCAGTTTTATATGACTCATACTTAGCACAGGACTTAA
AACATGGTACTTGAATGTAGAATTGCATTAAATATGTTTCTATTAATAAA
TAGTTGGTAATAAATATTATATATGTATATATCATATGTAATAGATAATC
ATTTATTACCATTAAAAACTTTTAAAATGAACCGGATATAAAGTTTTGTC
AAGAAAGGCTTAGGCTTTTTATAAAAAGAAAAATGTTTGAAAGGAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no402_f04.g1 MSMg01no402_f04.g1 CHROMAT_FILE:
MSMg01no402_f04.g1 PHD_FILE: MSMg01no402_f04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:16:10 2005
         (514 letters)



>mm_chr11_25376449_25377362
          Length = 914

 Score =  779 bits (403), Expect = 0.0
 Identities = 409/411 (99%)
 Strand = Plus / Minus

                                                                       
Query: 104 ctttgcagtctatatccactttcagatcttgaactatttaactcatttcctgttatgctt 163
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 914 ctttgcagtctatatccactttcagatcttgaactatttaactcatttcctgttatgctt 855

                                                                       
Query: 164 tttaatgtccacatagatgtctttaacgcatttatttattcatttcttctctaaagaccc 223
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 854 tttaatgtccacatagatgtctttaacgcatttatttattcatttcttctctaaagaccc 795

                                                                       
Query: 224 tatcatacttgtaaaggctaggttagggtccttatcttgttttgcaactatgctgcattt 283
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 794 tatcatacttgtaaaggctaggtgagggtccttatcttgttttgcaactatgctgcattt 735

                                                                       
Query: 284 ctcagggcatgctgtggtagtagaacaggcctcactctcttattacacaatgaaactaac 343
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 ctcagggcatgctgtggtagtagaacaggcctcactctcttattacacaatgaaactaac 675

                                                                       
Query: 344 ttttttttttcttttttgcttcatctgtgttttcacattgttcagtgtgaagtttggtca 403
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 ttttttttttcttttttgcttcatctgtgttttcacattgttcagtgtgaagtttggtca 615

                                                                       
Query: 404 tgtatagaatcctgtggctgagaatcatttttttttattcagttttatatgactcatact 463
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 tgtatagaatcctgtggctgagaatcatttttttttattcagttttatatgactcatact 555

                                                              
Query: 464 tagcacaggacttaaaacatggtacttgaatgtagaattgcattaaatatg 514
           |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 554 tagcacaggactcaaaacatggtacttgaatgtagaattgcattaaatatg 504


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 914
Length adjustment: 10
Effective length of query: 504
Effective length of database: 904
Effective search space:   455616
Effective search space used:   455616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)