BAC Information

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BAC

Clone NameMSMg01-402G22
Chromosome11 (Build37)
Map Location 19,754,005 - 19,754,152
singlet/doubletsinglet
Overlap geneLOC665868
Upstream geneMeis1, LOC635455, LOC100042708, Glns-ps1
Downstream geneLOC100041937, Spred2, Actr2, Rab1, Cep68, LOC216544, Slc1a4, LOC100042746, LOC382492, Sertad2, LOC665953, Aftph, 1110067D22Rik, LOC100042035
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-402G22.T7 (MSMg01no402_g22.b1)MSMg01-402G22.TJ (MSMg01no402_g22.g1)
ACCAG501581AG501582
length742884
length of high quality
(start - end)
135 (181 - 315)151 (124 - 274)
definitionCHROMAT_FILE: MSMg01no402_g22.b1 PHD_FILE: MSMg01no402_g22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:16:19 2005CHROMAT_FILE: MSMg01no402_g22.g1 PHD_FILE: MSMg01no402_g22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:16:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCG
CGGAATTCACCGCCATGACCTCCTTGTTGGTTCCGTTCCCATCTTTTCTA
ACGTGAACACACGCAAGTCCTTCCCCGCTCAGATTCTGTGGTCAGGGAGA
GGGCTGTTCCGAGGAGGTGAGTTTTCTGTAACTGTAGGACTCAGACTGGT
TGCGTTGCTGGTTTTTGTTTGTTTGGTTTGGTTTTTTAGTTTTTACAACC
TGCTTATTTTATATATATATGAGTACACTGCAGCTGTCCTCAGATACACC
AGAAGAGGGCGTAAGATCCCTCTATAGATGGTTGTGAGCCACCATGTGGT
TGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTACC
CGCTGAGCCTGGCTGGCTTTGTTCGCATCCCCGCTGTCTGTCTTTGTGAA
TGACTGGGACTTGTCCAGCCCAGGCTGCCCTCCACCTCACTGTGTAGCTG
AGGATAACCCTGAACTCCAGCTTCTCCCCTCTCAGTCTCCCCAGCGCTGG
GATCATGGCGTGTATTAGCTGTCCTATGAGCACCACTCATAGCACCACTG
AGAACTTCTTTCTGCTTTTATTTCCCCTTTGAAAATCTCCTTTTTTCCCT
TTTTTTTTTTTTGGCTCTTCTTGAGACAGGGCTTCCTCTGCGGAAATCCT
GGCCTGTCCCTGGAATTCCTTCTTGTGTATCTTGGCTGGGTC
TTTTCGTTGCTATGAGTTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGACAGACCAGGGTAGGTCC
ACACAGCAGGTTTTCATCTACCAAGTGGTCCCAGAGGCTCAAGGAGAGGC
CTGGGGGTTGGTTGGTTTCTCTCTCCTGAAACATATCCAAGCCTGAGGCC
AACCCCAGAATGCATGTGTAAGGTTACAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTAGTTTTTCTTCC
CTTTCTTTTCCTTTTTCCGTTCTTTTTATTTACTGCTTGACTTTTTTTTT
TTGTCTTCTTTTCTCTTCTCTTTTGATTTTACTTTTCTCCTTCATTTTTT
TTTTTCTCCTTCTCCCCCTGTTTTTCGCTCTCCTTCTTTTTTTACTCTTT
TCTCTTCCCTCTGCTTTGTTTTTTTTAGTCCCTTTTTCTATTAGTGTGTT
CCTTGTTTTCCTCTCTACTATTGTGTTTTTTATTTCTTTCTCTCTCTTTT
CTTCCTATCTTTTATTCTCTTGTTGTGTATCTCCTTTCTTTTTGTGCTAC
TCCGTTTTGTTTGACTTTTTCTTTTTTTATGCTATTTGTTTTATGTGTAC
AGACTGTGTCGTTGTTTTATTTTGCTGTGTTTGATGCTTCTGTTCCTCTT
GTTGTCTCATTTCGCTCCTTATTCCTTTTGTGTGTTCTTTCTTACACTCT
CTGTTGTTATCTTTGTCTCTCCTCTTGTGTCACTTTTTTTTTTTTCGTTC
TTCTCTGTTTTTTTCTATTCTCTTCCTTTCCTCTTTTGTATTTTCTATTT
TATCTGGCTTGTTTCACCTTGCTTCTCCTTTGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no402_g22.g1 MSMg01no402_g22.g1 CHROMAT_FILE:
MSMg01no402_g22.g1 PHD_FILE: MSMg01no402_g22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:16:19 2005
         (151 letters)



>mm_chr11_19753805_19754355
          Length = 551

 Score =  271 bits (140), Expect = 2e-77
 Identities = 146/148 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtggtcccagaggctcaaggagaggcctgggggttggttggtttctctctcctgaaaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct: 201 agtggtcccagaggctcaaggagaggcctgggggttggttggtttctttctcttgaaaca 260

                                                                       
Query: 61  tatccaagcctgaggccaaccccagaatgcatgtgtaaggttacagagagagagagagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatccaagcctgaggccaaccccagaatgcatgtgtaaggttacagagagagagagagag 320

                                       
Query: 121 agagagagagagagagagagagagagag 148
           ||||||||||||||||||||||||||||
Sbjct: 321 agagagagagagagagagagagagagag 348


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 18
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 1
Length of query: 151
Length of database: 551
Length adjustment: 8
Effective length of query: 143
Effective length of database: 543
Effective search space:    77649
Effective search space used:    77649
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)