BAC Information

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BAC

Clone NameMSMg01-402L19
Chromosome11 (Build37)
Map Location 6,976,813 - 6,977,053
singlet/doubletsinglet
Overlap geneAdcy1
Upstream geneNudcd3, LOC100042173, Npc1l1, LOC100041242, LOC665250, Ddx56, Tmed4, Ogdh, LOC100042227, Zmiz2, Ppia, H2afv, LOC665277, LOC665283, LOC626342, Purb, Myo1g, LOC100041286, Ccm2, LOC665327, AB182283, Tbrg4, Wap, LOC100041311, Ramp3, LOC665314, LOC626419, LOC665339, LOC665343, LOC100041332
Downstream geneLOC100041347, Igfbp1, Igfbp3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-402L19.T7 (MSMg01no402_l19.b1)MSMg01-402L19.TJ (MSMg01no402_l19.g1)
ACCAG501814AG501815
length732725
length of high quality
(start - end)
479 (76 - 554)242 (80 - 321)
definitionCHROMAT_FILE: MSMg01no402_l19.b1 PHD_FILE: MSMg01no402_l19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:16:44 2005CHROMAT_FILE: MSMg01no402_l19.g1 PHD_FILE: MSMg01no402_l19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:16:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCTCTATTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCAACTTAGCCACCTCCAATGGCTGAGAAGCACCTAAAGAAA
TGTTAAACATCCTTAGTCATCAGGGAAATGCAAATCAAAACAACCTTAGA
TTCCACCTCACACCAATCAGAATGGATAAGATCAAAAAGGCAGGAGACAG
CAGATGCTGACAAGGATGTGGAGAAAGAGAACACTCCTCCATTGCTGATA
GGACTGCAAGCTGGTAAAAAAAAACAATTTGGAAATCAATCTGGTGGTTC
CTCAGAAAGTTGGAAATAGTTCTCCCTGAAGACCCAGCAATACCTCTACC
GGGGAAATACCCAAAAGATGCTACAACATATAACAAAAACATATGCTCAA
CTATGTTTATAGCAATCTTATTCCAGAAGCTAGAAACAACCCAGATGTCC
TTCAACAGTAGAATGGATATGGAAAATGTGATACATTTACACAATGGAGT
ACTACTCAGCTATTTAAAACAATGACTTCATTAAATTCACAGGTAAATGG
ATGGAACTAGAAAAATATCATCCTGAATGAGGCAACCCATACTCTAAAGA
ATGCCCATAATATGTACGCATTGATAAATGGATATTAGTCCCATAGTTTT
GAATACCCCCAATAAAACCCTATAATTTTATAAACCGTATTGGAGCTTAT
TATGGATGATCCTGGGTGTATTATGCTTCATT
CCTTCCTATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATGATGTCAGGGTCACAGTG
AGGTTCTCAAGGTCACATAGTGAGGTCAGTGCCACAGTGAGATTCTCAGG
GTCACAGGGCGGGGTAAGGGTCACAGTGAGATGCTCTCTCTAATATGTTT
CTAGAGTACCTGTGACCACTACTGGTTTATGCCTTTGAGATATAAAGCTT
TATTTATGACAGATGGAATTCATGAAGTTAGAGGTACCAATCCAGAAGGG
ATTTAGTGTTTGATGACAAATTTTTTTTGTAAGTAATTAGAGGATGATTG
CAAAAGCAAATTAAAGAACTTGTCTGGTTACAATCTCACCGTTACCGTAT
TTGATGCACCCCACCGGAAGGTGCCAGCAATACAGCTCTAAATTGACTGC
TTCTTCCACTGCTCGGGCTTAAGTTCTCATTTCCATTAGTAAGGCATTTG
CAACAGACTACTCTCTGTCAGGCTTGGTCCTGTTTGTACATCTAGTCAAG
GTTAAAGTCACGCGTGAGACCTGGATGCTTTAATACAGTCTCCAGTTTCC
GTCCTCTTTTTAAATTCCGTTGGAAGAGGTCTTTTCCCACCACCTGACTT
TGAAGATGCCCAGAATCTTCTTTGTTGCCCCAATTTGTTCTCTATGGGGT
CCCCCGCTGGTATCTCCCTTCTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no402_l19.g1 MSMg01no402_l19.g1 CHROMAT_FILE:
MSMg01no402_l19.g1 PHD_FILE: MSMg01no402_l19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:16:44 2005
         (242 letters)



>mm_chr11_6976613_6977254
          Length = 642

 Score =  451 bits (233), Expect = e-131
 Identities = 239/241 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgatgtcagggtcacagtgaggttctcaaggtcacatagtgaggtcagtgccacagtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catgatgtcagggtcacagtgaggttctcaaggtcacatagtgaggtcagtgccacagtg 260

                                                                       
Query: 61  agattctcagggtcacagggcggggtaagggtcacagtgagatgctctctctaatatgtt 120
           |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 261 agattctcagggtcacagggtgaggtaagggtcacagtgagatgctctctctaatatgtt 320

                                                                       
Query: 121 tctagagtacctgtgaccactactggtttatgcctttgagatataaagctttatttatga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctagagtacctgtgaccactactggtttatgcctttgagatataaagctttatttatga 380

                                                                       
Query: 181 cagatggaattcatgaagttagaggtaccaatccagaagggatttagtgtttgatgacaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagatggaattcatgaagttagaggtaccaatccagaagggatttagtgtttgatgacaa 440

            
Query: 241 a 241
           |
Sbjct: 441 a 441


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)