BAC Information

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BAC

Clone NameMSMg01-402L21
Chromosome11 (Build37)
Map Location 88,120,547 - 88,320,453
singlet/doubletdoublet
Overlap geneLOC668793, Msi2
Upstream genePpm1e, Rad51c, Tex14, Sept4, Mtmr4, Hsf5, Rnf43, Supt4h1, Bzrap1, Mpo, Lpo, Mks1, Epx, Olfr462, Olfr463, Olfr464, Dynll2, Sfrs1, Vezf1, Cuedc1, Mrps23, 1700106J16Rik
Downstream geneLOC100038945, Akap1, Scpep1, OTTMUSG00000001305, 2210409E12Rik, Coil, LOC100039051, Trim25, Dgke, A930013B10Rik, Gm525, LOC100039114, Nog, LOC100039047, 4932411E22Rik, Ankfn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-402L21.T7 (MSMg01no402_l21.b1)MSMg01-402L21.TJ (MSMg01no402_l21.g1)
ACCAG501818AG501819
length726740
length of high quality
(start - end)
244 (73 - 316)525 (77 - 601)
definitionCHROMAT_FILE: MSMg01no402_l21.b1 PHD_FILE: MSMg01no402_l21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:16:45 2005CHROMAT_FILE: MSMg01no402_l21.g1 PHD_FILE: MSMg01no402_l21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:16:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,120,547 - 88,120,790)(88,319,929 - 88,320,453)
sequence
NTTTTCTATNATTGCGGCGCTATACGACTCACTATATTCACAGATCCGCG
GAATTCACCTGTATCCCCAGCCAGACTTCCCACAGACTGTACTCCTGTTC
CATAAGTGAGTCCTGAAGTGCCAACCTTGGTTTCCAGTCTGTGTTTCTGT
GGCTTTTGTTGTTCTGGTATAGTTGCTGTCCTGCTCTGTGTGGGCTCTGC
CTTGCTTACAGGAAGGAAAGACTTGTCAATGTGCCATTTTCTCCTGAAGC
TCTGCATTCTTCTGCCTCTTCAGGAGAGCTCAATTCTGTAAAGCACAGAG
TTGCTTGGACAATGGCCGTCTTATCAGCTATGGAAATGGTCCCGGGGAGA
GCACACAACTCATATTAGCACATGGTTACGTGCACTGGAATCCAAAAGGA
TTTGTGTGTTATTCCAGGTACCCCTCTTACCGGAAGAGAGTCCTGAGGTT
ACTATCCATCCCCTGCCAAGAGCCATTGTCTACAAAGAACAGGTAAGCTA
GGACAGGGTTTGGAAAACTTGCGATCTGGGGGCCCATCTAAACTTTTCCA
GAGGGCTCAGGACAGTCCTACCCAGCTCTCCTTCCAGTATGTTCGGAAGG
AATCATATGATAGTGTGGACAGGCTACTTGATGAGTACTGGCAGTGTTCT
GCTATCCTTCTTGTGCTACTCTTGTTTTAACGATAGAAAGGTTCCTATTC
GAATCTAGCCTTCTTCCCAGTGAAGT
NNCCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTGGACCTCTCTTGAGTCCTGCTC
TCAAGGAAGCCTGGGGCTGTGTATTTAACAAGGCCACCAGATGTGCTCCC
TGGACTGGTGAGTGGCTGGGAGCCACAGCACTGTCCTCACTGGCAATGCC
AGCACAGCCCTGGTGTCAGCATAGAGGCTGTTGATGGCTTTGAGCACCAG
GTGCTCTGAACTCATCCTGTGGACCAGGGAGCGAGTCCTAGAGACACAGT
ACACCCCACTGGGCCTGAGTGATGGATCGTGGGAGCAGTGGTCTCAGATT
ACATTAGAGCCAGAGAGGACACATGCAATTCTCTTCACGTTTCCCGATTC
CTAAATGAGAGAACTGATAGTTGAAGAGGAAGAGTTATGCCCAGGGACAT
GCCCATGGCAGAGCTGGTCCCACTGAAGTTCCTCCTAAGGAGGAACGCGC
CAAAGGAGATGTCACCCTTTGCCTTGCCATTGCTAAGATGATTTAAAAGA
AGGGTTGCTTTTAATTAGAATAAACACGGCATTTTTCTTGCTGCAACAAG
GCTTTTCAAGGGAGGGGTGACCCTCAGTACCCCAATTATGCCAGAGCAGT
CCCAGCTCTATCCAGGAGTAATTAAAAAATACAGCTTGACCCTTGTTCCT
CCCCTCTGTTTTTAAAGGACCAGCCAAACATCTGTCCAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no402_l21.b1 MSMg01no402_l21.b1 CHROMAT_FILE:
MSMg01no402_l21.b1 PHD_FILE: MSMg01no402_l21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:16:45 2005
         (244 letters)



>mm_chr11_88120347_88120990
          Length = 644

 Score =  472 bits (244), Expect = e-138
 Identities = 244/244 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agacttcccacagactgtactcctgttccataagtgagtcctgaagtgccaaccttggtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agacttcccacagactgtactcctgttccataagtgagtcctgaagtgccaaccttggtt 260

                                                                       
Query: 61  tccagtctgtgtttctgtggcttttgttgttctggtatagttgctgtcctgctctgtgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccagtctgtgtttctgtggcttttgttgttctggtatagttgctgtcctgctctgtgtg 320

                                                                       
Query: 121 ggctctgccttgcttacaggaaggaaagacttgtcaatgtgccattttctcctgaagctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggctctgccttgcttacaggaaggaaagacttgtcaatgtgccattttctcctgaagctc 380

                                                                       
Query: 181 tgcattcttctgcctcttcaggagagctcaattctgtaaagcacagagttgcttggacaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcattcttctgcctcttcaggagagctcaattctgtaaagcacagagttgcttggacaa 440

               
Query: 241 tggc 244
           ||||
Sbjct: 441 tggc 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no402_l21.g1 MSMg01no402_l21.g1 CHROMAT_FILE:
MSMg01no402_l21.g1 PHD_FILE: MSMg01no402_l21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:16:45 2005
         (525 letters)



>mm_chr11_88319729_88320653
          Length = 925

 Score = 1000 bits (517), Expect = 0.0
 Identities = 523/525 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctggacctctcttgagtcctgctctcaaggaagcctggggctgtgtatttaacaaggcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 ctggacctctcttgagtcctgctctcaaggaagcctggggctgtgtatttaacaaggcca 666

                                                                       
Query: 61  ccagatgtgctccctggactggtgagtggctgggagccacagcactgtcctcactggcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 ccagatgtgctccctggactggtgagtggctgggagccacagcactgtcctcactggcaa 606

                                                                       
Query: 121 tgccagcacagccctggtgtcagcatagaggctgttgatggctttgagcaccaggtgctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 tgccagcacagccctggtgtcagcatagaggctgttgatggctttgagcaccaggtgctc 546

                                                                       
Query: 181 tgaactcatcctgtggaccagggagcgagtcctagagacacagtacaccccactgggcct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 tgaactcatcctgtggaccagggagcgagtcctagagacacagtacaccccactgggcct 486

                                                                       
Query: 241 gagtgatggatcgtgggagcagtggtctcagattacattagagccagagaggacacatgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 gagtgatggatcgtgggagcagtggtctcagattacattagagccagagaggacacatgc 426

                                                                       
Query: 301 aattctcttcacgtttcccgattcctaaatgagagaactgatagttgaagaggaagagtt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 aattctcttcacgtttcccgattcctaaatgagagaactgatagttgaagaggaagagtt 366

                                                                       
Query: 361 atgcccagggacatgcccatggcagagctggtcccactgaagttcctcctaaggaggaac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 atgcccagggacatgcccatggcagagctggtcccactgaagttcctcctaaggaggaac 306

                                                                       
Query: 421 gcgccaaaggagatgtcaccctttgccttgccattgctaagatgatttaaaagaagggtt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gcgccaaaggagatgtcaccctttgccttgccattgctaagatgatttaaaagaagggtt 246

                                                        
Query: 481 gcttttaattagaataaacacggcatttttcttgctgcaacaagg 525
           | ||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 245 ggttttaattagaataaacacggtatttttcttgctgcaacaagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 925
Length adjustment: 10
Effective length of query: 515
Effective length of database: 915
Effective search space:   471225
Effective search space used:   471225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)