Query= MSMg01no403_a01.b1 MSMg01no403_a01.b1 CHROMAT_FILE:
MSMg01no403_a01.b1 PHD_FILE: MSMg01no403_a01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:07 2005
(594 letters)
>mm_chr11_104792221_104793214
Length = 994
Score = 1079 bits (558), Expect = 0.0
Identities = 585/594 (98%)
Strand = Plus / Minus
Query: 1 aatctattttttaaaattgtttctgagatggtctttcaacttagtattatgaaatgagga 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 aatctgttttttaaaattgtttctgagatggtctttcaacttagtattatgaaatgagga 735
Query: 61 tagctttgccacagagaaatataaaagccttttttaaaaaatcacattaatatttgagat 120
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 734 tagctttgccacagagaaatataaaagcctttttaaaaaaatcacattaatatttgagat 675
Query: 121 gcttaccatcaaatggcagactttccatcagtttggacagttcttgatctttgtactcta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 gcttaccatcaaatggcagactttccatcagtttggacagttcttgatctttgtactcta 615
Query: 181 gtcccatgttttccagaacatttttcacctcatcgataccaattttttctccttaataat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 gtcccatgttttccagaacatttttcacctcatcgataccaattttttctccttaataat 555
Query: 241 aaagattaaaatagtgacatacatggaattttgcacaatcatagataattaaactataca 300
||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct: 554 aaagattaaaatagtgacacacatggaattttgcacaatcacagataattaaactataca 495
Query: 301 atataagtgcagggtgggaccatccatggccactgagtatctagaaagaacatccttcaa 360
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 atataagggcagggtgggaccatccatggccactgagtatctagaaagaacatccttcaa 435
Query: 361 agaaacacgatttgtttgtagacgtcatcaagagaagagagcttactctcaatgttggtt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 agaaacacgatttgtttgtagacgtcatcaagagaagagagcttactctcaatgttggtt 375
Query: 421 gtgagaacacaccagtaggatacactgagaacctacgttggccccagctaccatgtttga 480
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct: 374 gtgagaacacaccagtaggatacactgagaacctaagttggccccagctactatgtttga 315
Query: 481 aatccatccccatatttgcttcctgagatcaatgacggagagcaacgaagatacaaagga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 aatccatccccatatttgcttcctgagatcaatgacggagagcaacgaagatacaaagga 255
Query: 541 aacccgtttctgtaagtggtggctgactttgctggagaattgctgcaaaccctg 594
|| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 aatccatttctgtaagtggtggctgactttgctggagaattgctgcaaaccctg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 994
Length adjustment: 10
Effective length of query: 584
Effective length of database: 984
Effective search space: 574656
Effective search space used: 574656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no403_a01.g1 MSMg01no403_a01.g1 CHROMAT_FILE:
MSMg01no403_a01.g1 PHD_FILE: MSMg01no403_a01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:07 2005
(380 letters)
>mm_chr11_104621076_104621855
Length = 780
Score = 619 bits (320), Expect = 0.0
Identities = 364/386 (94%), Gaps = 14/386 (3%)
Strand = Plus / Plus
Query: 1 aattctagaaggtctttaatttcttcctttctttattccctgacccagtgactattgagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aattctagaaggtctttaatttcttcctttctttattccctgacccagtgactattgagt 260
Query: 61 agagactttttcagtttccatgaggatgtgactttctgttgtttctgttattgttgatgt 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agagactttttcagtttccacgaggatgtgactttctgttgtttctgttattgttgatgt 320
Query: 121 ccagctttaatccatgatggtttgataagatacaagaggtgatttcgattttcttatatc 180
||| |||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||
Sbjct: 321 ccatctttaatccatgatggtttgataagataaaagaagtgatttcgattttcctatatc 380
Query: 181 tgttgacacttgctttgtgaccaattagatggtcaattttgatgcaacatggagacaaaa 240
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 381 tgttgacacttgctttgtgaccaactagatggtcaattttgatgcaacatggagacaaaa 440
Query: 241 cagcacttttttta---ta----tatgtaacttttatttgaattatgaagcaaacattgc 293
|||||| | || |||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagcac-------aaggtagagatatgtaacttttatttgaattatgaagcaaacattgc 493
Query: 294 taagtatgacatagatttaaaattgccagttgtcttactgttgattattgaaaattttcc 353
||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 494 taagtatgacataaatttaaaattgccagtcgtcttactgttgattattgaaaattttcc 553
Query: 354 aattatgttattctctgaggtaattc 379
||||||||||||||||||||||||||
Sbjct: 554 aattatgttattctctgaggtaattc 579
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 780
Length adjustment: 9
Effective length of query: 371
Effective length of database: 771
Effective search space: 286041
Effective search space used: 286041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
