BAC Information

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BAC

Clone NameMSMg01-403D04
Chromosome11 (Build37)
Map Location 56,580,982 - 56,581,527
singlet/doubletsinglet
Overlap genenone
Upstream geneNmur2, LOC100040816, LOC624168
Downstream geneGria1, LOC667878, 1810073G14Rik, Mfap3, Galnt10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-403D04.T7 (MSMg01no403_d04.b1)MSMg01-403D04.TJ (MSMg01no403_d04.g1)
ACCAG502165AG502166
length753736
length of high quality
(start - end)
550 (45 - 594)472 (77 - 548)
definitionCHROMAT_FILE: MSMg01no403_d04.b1 PHD_FILE: MSMg01no403_d04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:24 2005CHROMAT_FILE: MSMg01no403_d04.g1 PHD_FILE: MSMg01no403_d04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAATGCTGCAGTTACCTAAGTCTCTCTCATCACCTCTCACAGCTCTT
TGGAGTTGCCAGGGGAATTCTGTGGTTCCCAGCAGAGGTGTGATTTTCTC
ATGAGCTACAAATGCTTCCTCTGAAGGAAAAGCCAGTTCTGAGGCTTCAA
AAGAATGTGCAGGCTGCTGCCTTTGATAACTCAGGAACTCCTCATTCTGT
CACAAACTGGTGCTAAGTATTAATAAGGGAAAGACTGGCAGGCAGATTTC
TATCCCTACCCACCCCCATGGCTCCTCAGTCCTTCAGCTTCTATGGCAAC
AGCCTCCTGACTGGCTTTTCCTTCTGTGATTTCTTTCTCATGGTAGCTTC
TCTGGTTTGTAAGTTCTCAAAGCACAGTGCTATCATTTGATTTTCTACTT
CTGAAGCCTAAACAACAGACAGTTTGTAAGTATATTTTATGTGTTTTATC
TTGGCATTTACAACCATCCATGACCTAATGTCTGCCTCTCTTTTTTTGTC
ATAACTAACTTAATGTAGTATAGATTTTAGCCAAATTAAATTTCAGATAT
CCTTAATTCATGACCAGCATTTTCCTAATGTGAAAACTGACCCAGCTTTC
TTACTCTAATAAAAAATATCCTGAGAAAAATCCCCTTTTTGGAGAAAGGG
AATTTTATATCCCCAATTCCCGGTTTTAAGCCATTAATGGCAAAGATACA
AGN
CGAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCGAACAGCAATGGCT
TGTGCTGTAAGATAGAGAATTGACAAATGGGACCTCATAAAACTGCAAAG
CTTCTGTAAGGCAAAAGACACCGTCAATAAGACAAAAAGGCCACCAAGAG
ATTTGGAAAGGATCTTTATCTATCCTAAATCAGATAGGGCACTAATATCT
AATATATATAAAGAACTCAAAAAGGTGCACTCCAGAAAAATCAAATAACC
CCATTAAAAAATGGGGCTCAGAGGTAAACAAAGAATTCTCACCTGAGGAA
TACCAAATGGCTGAGAAGCACCTGAAAAAATGTTCAGCATCCTTAATCAT
CAGGGAAATGCAAATCAAAACAACCCTGAGATTCCATCTTACAACAGGCA
GAATGGCTAAGGTAAAAAATTCATGTGACAGCAGATGCTGGCGAGGATGT
GGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACA
ACCACTCTGGAAATCAGTCTGGTAGTTCCTCACAAAATTGGACAGAGAAC
TACCGGAGGATCCCGCGATACCTCTTCTGGACATATATCCACAAAAGGCT
TTCCCTGGTAAGAAAGACCCTTGTTCCACTATGCTCCACGCATCCCTATT
TATTATAGCCCCGAAGCGGGTAACAATCTAAACGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no403_d04.b1 MSMg01no403_d04.b1 CHROMAT_FILE:
MSMg01no403_d04.b1 PHD_FILE: MSMg01no403_d04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:24 2005
         (550 letters)



>mm_chr11_56580778_56581727
          Length = 950

 Score = 1040 bits (538), Expect = 0.0
 Identities = 544/546 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaatgctgcagttacctaagtctctctcatcacctctcacagctctttggagttg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaatgctgcagttacctaagtctctctcatcacctctcacagctctttggagttg 264

                                                                       
Query: 65  ccaggggaattctgtggttcccagcagaggtgtgattttctcatgagctacaaatgcttc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ccaggggaattctgtggttcccagcagaggtgtgattttctcatgagctacaaatgcttc 324

                                                                       
Query: 125 ctctgaaggaaaagccagttctgaggcttcaaaagaatgtgcaggctgctgcctttgata 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctctgaaggaaaagccagttctgaggcttcaaaagaatgtgcaggctgctgcctttgata 384

                                                                       
Query: 185 actcaggaactcctcattctgtcacaaactggtgctaagtattaataagggaaagactgg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 actcaggaactcctcattctgtcacaaactggtgctaagtattaataagggaaagactgg 444

                                                                       
Query: 245 caggcagatttctatccctacccacccccatggctcctcagtccttcagcttctatggca 304
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 445 caggcagatttctatccctacccacccccatggctccccagtccttcagcttctatggca 504

                                                                       
Query: 305 acagcctcctgactggcttttccttctgtgatttctttctcatggtagcttctctggttt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 acagcctcctgactggcttttccttctgtgatttctttctcatggtagcttctctggttt 564

                                                                       
Query: 365 gtaagttctcaaagcacagtgctatcatttgattttctacttctgaagcctaaacaacag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gtaagttctcaaagcacagtgctatcatttgattttctacttctgaagcctaaacaacag 624

                                                                       
Query: 425 acagtttgtaagtatattttatgtgttttatcttggcatttacaaccatccatgacctaa 484
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 acagtttataagtatattttatgtgttttatcttggcatttacaaccatccatgacctaa 684

                                                                       
Query: 485 tgtctgcctctctttttttgtcataactaacttaatgtagtatagattttagccaaatta 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tgtctgcctctctttttttgtcataactaacttaatgtagtatagattttagccaaatta 744

                 
Query: 545 aatttc 550
           ||||||
Sbjct: 745 aatttc 750


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 950
Length adjustment: 10
Effective length of query: 540
Effective length of database: 940
Effective search space:   507600
Effective search space used:   507600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)