BAC Information

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BAC

Clone NameMSMg01-403K23
Chromosome11 (Build37)
Map Location 67,602,829 - 67,789,498
singlet/doubletdoublet
Overlap geneLOC544792, Dhrs7c, LOC100041899, Usp43, Wdr16, Stx8
Upstream geneA530088H08Rik, 9130409J20Rik, A730055C05Rik, 2310004I24Rik, Sco1, Myh3, Myh2, Myh1, Myh4, Myh8, Myh13, Gas7, Rcvrn, Glp2r
Downstream geneNtn1, Pik3r5, BB220380, BC024997, Ccdc42, Myh10, Ndel1, 9930039A11Rik, Rpl26, Odf4, Arhgef15, Slc25a35, 2400006H24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-403K23.T7 (MSMg01no403_k23.b1)MSMg01-403K23.TJ (MSMg01no403_k23.g1)
ACCAG502537AG502538
length782781
length of high quality
(start - end)
468 (35 - 502)357 (71 - 427)
definitionCHROMAT_FILE: MSMg01no403_k23.b1 PHD_FILE: MSMg01no403_k23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:03 2005CHROMAT_FILE: MSMg01no403_k23.g1 PHD_FILE: MSMg01no403_k23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:04 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,789,043 - 67,789,498)(67,602,829 - 67,603,185)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGGATCCGCGGAATTCAGCTT
AAAACTTGCACTTGGAGCCAGATAGTCACATGTTTGAATCTGACTCCTGT
ATATATAGCTGTAGGGTCCTGGGAAAGATCCTGGCTTATCCAGGAGTCCT
CTCTCTATAAAACTCCCTGCTGTGATGTTGGGGTCTCTTCACCTATTTTC
TGTGACATGAGGTCCCAAGGTTGATCTGACCACGTCACCTTTTTTTATAA
AGAAGGAAAGAAATCACCAAGACCAAGCATATGAAGTAACTAGCACTGAC
AAGTGGCTTAAATCTGGAGGAAAGCCTGAATTAGTAAAAATGTTTTAAGA
GGAATGATGTTGGAGAACCGGAAGACTAGAAGATGCTACCTGGGGCTGGA
GCTGTAGGACACATGCTTAGCAGGTCCAGGACTCTAGGTTCAATCTCTAG
CATCAAACAAGCTAACAAAAGAAGTTTATTGAATTCACCACCTCCTTTTC
CAGTCTAGAAGANNANNTTTANNTNATTATAATAAATAAGGAGGGGGCTT
CCCTGAAAACAGTTTAAGAGAACCCCGCGCGGTGGATGATCCAATGTCCC
TCTACCGCAAAACGTATTTTTTGTAGGAAAAAAAAAAAAAAATCTTTTAA
AGGCTTTTAAACCCGGTGGGGTGCCTTCCCCCCCCCCCCGAAATAGAAAA
ATTCCTTTCCTTTCCTCCCCCTTTCCATGTTTATTTTTGGATTCCATCTC
CCCCTGGTGGGATTATAAAATTTCTCGCGGGG
TATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCACTCTAGGTCTTTTCTAACTGTGCCTTCT
ATTGCAGTCTTGCCTGGGGATCTTTTGCTCTCTGTATGACTGTTTCAGTG
GCGACCATGAGCAGATACACCACAGCCCAAGCAGAGGTGCCAAGGGCACG
AAAAGGTGGTCCATACTCTCAGCACAACACCCCACAGCCTGGACCTTCAC
AGAAGGTTTGGCAAACAGGAGCGACTCCCCATCCTGTGGGACACATCTTC
ACGAATGTTCCTGGGCACCCGCCCCCAGTTACAGGAGGCAAAGTGTCCAT
GTGCTAGCCAGTGCTGCATGTGTGGATGAGCCAGGCATTTATTACCACAA
TGAACACCCCTGGAGTGGAGTTCAGAAGACCACAGTATAGGTAAACTTTC
CACTACCCCTCTCTGGACTTAGCCTCTCATGTCTCCTACCATTCCTGTGT
CTTTAGAGGAAATAATGTCTACCGAAAATATCACTATTATCCCCCCCTAT
TAAGAAACATGTTCTTTTCATGACCTTGAACTAATCCAAAATCCCCAAAA
AGGGGACTCTGAAGTTATTTTGTCCCCCTGGGGGATGAAAAGATTCTCTC
TCTTTTCTTTTAAACAAAAATGTCTCCTCTCCCTCTCCTCGCTCGTCAAC
CTCGAATATTTTTTTTTCCCCGTGCACCTTATACCCCCTTTTTCCCCTAT
TTTCCCTCCTTACCATACTTTTCCCCCTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no403_k23.b1 MSMg01no403_k23.b1 CHROMAT_FILE:
MSMg01no403_k23.b1 PHD_FILE: MSMg01no403_k23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:03 2005
         (468 letters)



>mm_chr11_67788957_67789825
          Length = 869

 Score =  770 bits (398), Expect = 0.0
 Identities = 444/464 (95%), Gaps = 9/464 (1%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattcagcttaaaac-ttgcacttggagccagatagtcacatgtttgaatctgactcct 64
           ||||||||||||||||  || |||||||||||||||||||||| |||||| |||||||||
Sbjct: 542 gaattcagcttaaaacaatggacttggagccagatagtcacatatttgaacctgactcct 483

                                                                       
Query: 65  gtatatatagctgtagggtcctgggaaagatcctggcttatccaggagtcctctctctat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 gtatatatagctgtagggtcctgggaaagatcctggcttatccaggagtcctctctctat 423

                                                                       
Query: 125 aaaactccctgctgtgatgttggggtctcttcacctattttctgtgacatgaggtcccaa 184
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 422 aaaactccctgctgtgatgttgggatctcttcacctattttctgtgacatgaggtcccaa 363

                                                                       
Query: 185 ggttgatctgaccacgtcacctttttttataaagaaggaaagaaatcaccaagaccaagc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 ggttgatctgaccacgtcacctttttttataaagaaggaaagaaatcaccaagaccaagc 303

                                                                       
Query: 245 atatgaagtaactagcactgacaagtggcttaaatctggaggaaagcctgaattagtaaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 atatgaagtaactagcactgacaagtggcttaaatctggaggaaagcctgaattagtaaa 243

                                                                       
Query: 305 aatgttttaagaggaatgatgttggagaaccggaagactagaagatgctacctggggctg 364
           |||||||||||||||||||||||| |||| |||||||        |||||||||||||||
Sbjct: 242 aatgttttaagaggaatgatgttgaagaaacggaaga--------tgctacctggggctg 191

                                                                       
Query: 365 gagctgtaggacacatgcttagcaggtccaggactctaggttcaatctctagcatcaaac 424
           ||||||||| | |||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct: 190 gagctgtagaatacatgcctagcaggtctaggactctaggttcaatctctagcatcaaac 131

                                                       
Query: 425 aagctaacaaaagaagtttattgaattcaccacctccttttcca 468
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 aagctaacaaaagaagtttattgaattcaccacctccttttcca 87


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 869
Length adjustment: 10
Effective length of query: 458
Effective length of database: 859
Effective search space:   393422
Effective search space used:   393422
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no403_k23.g1 MSMg01no403_k23.g1 CHROMAT_FILE:
MSMg01no403_k23.g1 PHD_FILE: MSMg01no403_k23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:04 2005
         (357 letters)



>mm_chr11_67602629_67603385
          Length = 757

 Score =  638 bits (330), Expect = 0.0
 Identities = 351/358 (98%), Gaps = 2/358 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cactctaggtcttttctaactgtgccttctattgcagtcttgcctggggatcttttgctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cactctaggtcttttctaactgtgccttctattgcagtcttgcctggggatcttttgctc 260

                                                                       
Query: 61  tctgtatgactgtttcagtggcgaccatgagcagatacaccacagcccaagcagaggtgc 120
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctgtatggctgtttcagtggcgaccatgagcagatacaccacagcccaagcagaggtgc 320

                                                                       
Query: 121 caagggcac-gaaaaggtggtccatactctcagcacaacaccccacagcctggaccttca 179
           ||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 321 caagggcacagaaa-ggtggtccataccctcagcacaacaccccacagcctggaccttca 379

                                                                       
Query: 180 cagaaggtttggcaaacaggagcgactccccatcctgtgggacacatcttcacgaatgtt 239
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cggaaggtttggcaaacaggagcgactccccatcctgtgggacacatcttcacgaatgtt 439

                                                                       
Query: 240 cctgggcacccgcccccagttacaggaggcaaagtgtccatgtgctagccagtgctgcat 299
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 cctgggcacccgcccccaggtacaggaggcaaagtgtccatgtgctagccagtgctgcat 499

                                                                     
Query: 300 gtgtggatgagccaggcatttattaccacaatgaacacccctggagtggagttcagaa 357
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gtgtggatgagccgggcatttattaccacaatgaacacccctggagtggagttcagaa 557


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 357
Length of database: 757
Length adjustment: 9
Effective length of query: 348
Effective length of database: 748
Effective search space:   260304
Effective search space used:   260304
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)