Query= MSMg01no403_k23.b1 MSMg01no403_k23.b1 CHROMAT_FILE:
MSMg01no403_k23.b1 PHD_FILE: MSMg01no403_k23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:03 2005
(468 letters)
>mm_chr11_67788957_67789825
Length = 869
Score = 770 bits (398), Expect = 0.0
Identities = 444/464 (95%), Gaps = 9/464 (1%)
Strand = Plus / Minus
Query: 6 gaattcagcttaaaac-ttgcacttggagccagatagtcacatgtttgaatctgactcct 64
|||||||||||||||| || |||||||||||||||||||||| |||||| |||||||||
Sbjct: 542 gaattcagcttaaaacaatggacttggagccagatagtcacatatttgaacctgactcct 483
Query: 65 gtatatatagctgtagggtcctgggaaagatcctggcttatccaggagtcctctctctat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 gtatatatagctgtagggtcctgggaaagatcctggcttatccaggagtcctctctctat 423
Query: 125 aaaactccctgctgtgatgttggggtctcttcacctattttctgtgacatgaggtcccaa 184
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 422 aaaactccctgctgtgatgttgggatctcttcacctattttctgtgacatgaggtcccaa 363
Query: 185 ggttgatctgaccacgtcacctttttttataaagaaggaaagaaatcaccaagaccaagc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 ggttgatctgaccacgtcacctttttttataaagaaggaaagaaatcaccaagaccaagc 303
Query: 245 atatgaagtaactagcactgacaagtggcttaaatctggaggaaagcctgaattagtaaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 atatgaagtaactagcactgacaagtggcttaaatctggaggaaagcctgaattagtaaa 243
Query: 305 aatgttttaagaggaatgatgttggagaaccggaagactagaagatgctacctggggctg 364
|||||||||||||||||||||||| |||| ||||||| |||||||||||||||
Sbjct: 242 aatgttttaagaggaatgatgttgaagaaacggaaga--------tgctacctggggctg 191
Query: 365 gagctgtaggacacatgcttagcaggtccaggactctaggttcaatctctagcatcaaac 424
||||||||| | |||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct: 190 gagctgtagaatacatgcctagcaggtctaggactctaggttcaatctctagcatcaaac 131
Query: 425 aagctaacaaaagaagtttattgaattcaccacctccttttcca 468
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 aagctaacaaaagaagtttattgaattcaccacctccttttcca 87
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 869
Length adjustment: 10
Effective length of query: 458
Effective length of database: 859
Effective search space: 393422
Effective search space used: 393422
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no403_k23.g1 MSMg01no403_k23.g1 CHROMAT_FILE:
MSMg01no403_k23.g1 PHD_FILE: MSMg01no403_k23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:04 2005
(357 letters)
>mm_chr11_67602629_67603385
Length = 757
Score = 638 bits (330), Expect = 0.0
Identities = 351/358 (98%), Gaps = 2/358 (0%)
Strand = Plus / Plus
Query: 1 cactctaggtcttttctaactgtgccttctattgcagtcttgcctggggatcttttgctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cactctaggtcttttctaactgtgccttctattgcagtcttgcctggggatcttttgctc 260
Query: 61 tctgtatgactgtttcagtggcgaccatgagcagatacaccacagcccaagcagaggtgc 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctgtatggctgtttcagtggcgaccatgagcagatacaccacagcccaagcagaggtgc 320
Query: 121 caagggcac-gaaaaggtggtccatactctcagcacaacaccccacagcctggaccttca 179
||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 321 caagggcacagaaa-ggtggtccataccctcagcacaacaccccacagcctggaccttca 379
Query: 180 cagaaggtttggcaaacaggagcgactccccatcctgtgggacacatcttcacgaatgtt 239
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cggaaggtttggcaaacaggagcgactccccatcctgtgggacacatcttcacgaatgtt 439
Query: 240 cctgggcacccgcccccagttacaggaggcaaagtgtccatgtgctagccagtgctgcat 299
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 cctgggcacccgcccccaggtacaggaggcaaagtgtccatgtgctagccagtgctgcat 499
Query: 300 gtgtggatgagccaggcatttattaccacaatgaacacccctggagtggagttcagaa 357
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gtgtggatgagccgggcatttattaccacaatgaacacccctggagtggagttcagaa 557
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 357
Length of database: 757
Length adjustment: 9
Effective length of query: 348
Effective length of database: 748
Effective search space: 260304
Effective search space used: 260304
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
