BAC Information

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BAC

Clone NameMSMg01-404C02
Chromosome11 (Build37)
Map Location 104,923,520 - 105,091,271
singlet/doubletdoublet
Overlap geneLOC100041125, 4921510J17Rik, Mettl2, LOC666771, Tlk2, 1700052K11Rik
Upstream geneCrhr1, 4933407P14Rik, Mapt, 1700081L11Rik, Cdc27, Myl4, LOC666721, EG629959, Itgb3, LOC666739, LOC629960, LOC666749, LOC632784, LOC276809
Downstream geneMrc2, Rnf190, EG666807, Tanc2, LOC667737, Cyb561, Ace, EG217246, Kcnh6, Wdr68, Ccdc44, Map3k3, Limd2, 2610019A05Rik, 2610204L23Rik, Ddx42
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-404C02.T7 (MSMg01no404_c02.b1)MSMg01-404C02.TJ (MSMg01no404_c02.g1)
ACCAG502876AG502877
length736776
length of high quality
(start - end)
490 (61 - 550)238 (67 - 304)
definitionCHROMAT_FILE: MSMg01no404_c02.b1 PHD_FILE: MSMg01no404_c02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:41 2005CHROMAT_FILE: MSMg01no404_c02.g1 PHD_FILE: MSMg01no404_c02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:41 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,923,520 - 104,924,008)(105,091,034 - 105,091,271)
sequence
TGCGTTCGCTAAACGACTCACTATATCCCAGAGGATCCGCGGAATTCTGT
CATGTTTCCACTTCCACAAAGCACACAAGGACAAAGTCTGCACCCACCAA
CAAAACTCTACTCTCCAGAATGCTATGAGGATGCTTGGCAGCCAACAGCT
TAGAGAAGAAAAGAGAAATAATATCCATTGAATAAACATATACTTACAGC
TTGAGCCTTCTATTACATGTTCTTGTTGACTTAAAAGTTCTGAACAGGAG
CATGAAAACTTGCTATAATTCTACATACCATATTTCAAGAACGTTATGTT
ATTTTTTTTAATGTCTTCATCCTTGAATCTAAATTCTGAATTTTCTTGCA
GACCGTAGAAGGGTTAGCTTGGATGTGTTGATGGATGCAGCTAAGATTTT
CACAGGTGAGAACTCATGTGATGATATAACACTGAGACACAGGTCTGTGT
GGATGATCACCCCTCTTAATTGTCAATCTACCACCCCACTAGTCACTAAG
TCCATTCAGTTCCTTATCTACTTATAGATAATTTTGTGTCATTGACAGCC
ATCCTGAATATTATAAATTTACAAGAAGTACAGATCTCTCAGAAACAAAT
ACTAGCTTCAATATTCGTGTCTGGATAGCATTTACTTCCCTAGTGTCTGA
AGGATCAAAATATTTTTTGCCAGAGTGATTTCTAATGCCCGATTTTTGCA
TCATGAATATGTCTCGTATGAACTACCCTTCCCCAN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAGGGCATTTTCTGAAGCTAAGATCATTAATATTT
ACTGCTCCTGACTGTAGGGTTAAATTCGAAGAGATAAGAATAAATGTTTT
TAAGGCAGAAATAGATGAAGAGCAGACAATACTCAGATATGTAAAACTGC
AGAAGTGGGTGGTGAGTGGGGAATTAGAATGCCAAAACACTTTGAAAGCT
GATACACTTGGACAGAAAAAGAAGGTGCCACTGACTGGAGGCGACTGGCT
ATACAGGTCTGGAACTCTTTTCTTAGAGATCTGACTACAGAGAGAATCTT
GAAAGTCTTTTGTACCCAGGTGACAGGGTTTAATGTCAAACTAGGCGAGA
TTAAGTGTAAAATGGAGGTAGATAAAAGATTCTTTAGCCTGAGTTCTACT
ATATCCCAGTGTGTATAGCACTGCTGCGAGGAATGTTGCTAATACAGTCC
TTTTTGAGATTGTGTGCCGCGTATTTAATCGAGCCGCCACCCTTTCTGTC
TCTTGTTTTCTAGCTTCACGCCCTTTTACCCTCCCTCCCCTTTTTTTTCC
TTCCCCCCCCGCTTTTTTTTTCCTTTCTTCTTTTTTTGCTCCGCTTTTTT
CTCCCCCCTCCCTCCTTTTTTTATCTTATCTCACCCTCTTTCCTATTTTA
TTCTCTTTTATTTTCTTATTCCCTTTTCTTTTTCCCCCTCTCCCATTTAT
TCCTTTTTTCTCTATTTTATTCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no404_c02.b1 MSMg01no404_c02.b1 CHROMAT_FILE:
MSMg01no404_c02.b1 PHD_FILE: MSMg01no404_c02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:41 2005
         (490 letters)



>mm_chr11_104923320_104924209
          Length = 890

 Score =  922 bits (477), Expect = 0.0
 Identities = 486/489 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttccacaaagcacacaaggacaaagtctgcacccaccaacaaaactctactctccagaa 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 201 cttccacaaagcacacaaggacaaagtctgcacccaccaacaaaactctagtccccagaa 260

                                                                       
Query: 61  tgctatgaggatgcttggcagccaacagcttagagaagaaaagagaaataatatccattg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgctatgaggatgcttggcagccaacagcttagagaagaaaagagaaataatatccattg 320

                                                                       
Query: 121 aataaacatatacttacagcttgagccttctattacatgttcttgttgacttaaaagttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aataaacatatacttacagcttgagccttctattacatgttcttgttgacttaaaagttc 380

                                                                       
Query: 181 tgaacaggagcatgaaaacttgctataattctacataccatatttcaagaacgttatgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgaacaggagcatgaaaacttgctataattctacataccatatttcaagaacgttatgtt 440

                                                                       
Query: 241 attttttttaatgtcttcatccttgaatctaaattctgaattttcttgcagaccgtagaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attttttttaatgtcttcatccttgaatctaaattctgaattttcttgcagaccgtagaa 500

                                                                       
Query: 301 gggttagcttggatgtgttgatggatgcagctaagattttcacaggtgagaactcatgtg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gggttagcttggatgtgttgatggatgcagctaagattttcacaggtgagaactcatgtg 560

                                                                       
Query: 361 atgatataacactgagacacaggtctgtgtggatgatcacccctcttaattgtcaatcta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgatataacactgagacacaggtctgtgtggatgatcacccctcttaattgtcaatcta 620

                                                                       
Query: 421 ccaccccactagtcactaagtccattcagttccttatctacttatagataattttgtgtc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 621 ccaccccactagtcactaagtccattcagttccttatctacttatagataattttgtctc 680

                    
Query: 481 attgacagc 489
           |||||||||
Sbjct: 681 attgacagc 689


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space:   422400
Effective search space used:   422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no404_c02.g1 MSMg01no404_c02.g1 CHROMAT_FILE:
MSMg01no404_c02.g1 PHD_FILE: MSMg01no404_c02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:41 2005
         (238 letters)



>mm_chr11_105090834_105091471
          Length = 638

 Score =  460 bits (238), Expect = e-134
 Identities = 238/238 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agggcattttctgaagctaagatcattaatatttactgctcctgactgtagggttaaatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 agggcattttctgaagctaagatcattaatatttactgctcctgactgtagggttaaatt 379

                                                                       
Query: 61  cgaagagataagaataaatgtttttaaggcagaaatagatgaagagcagacaatactcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 cgaagagataagaataaatgtttttaaggcagaaatagatgaagagcagacaatactcag 319

                                                                       
Query: 121 atatgtaaaactgcagaagtgggtggtgagtggggaattagaatgccaaaacactttgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 atatgtaaaactgcagaagtgggtggtgagtggggaattagaatgccaaaacactttgaa 259

                                                                     
Query: 181 agctgatacacttggacagaaaaagaaggtgccactgactggaggcgactggctatac 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 agctgatacacttggacagaaaaagaaggtgccactgactggaggcgactggctatac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space:   144041
Effective search space used:   144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)