Query= MSMg01no404_k20.b1 MSMg01no404_k20.b1 CHROMAT_FILE:
MSMg01no404_k20.b1 PHD_FILE: MSMg01no404_k20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:26 2005
(475 letters)
>mm_chr11_72511772_72512646
Length = 875
Score = 847 bits (438), Expect = 0.0
Identities = 464/478 (97%), Gaps = 12/478 (2%)
Strand = Plus / Plus
Query: 4 gaattctctgtaactgcca-ttacactcggtagtaactttcatctgtgactagagtgaaa 62
|||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattctctgtaactgg-agttacactcggtagtaactttcatctgtgactagagtgaaa 262
Query: 63 taattttttaaagcaagcttgatagtttctagaatttgtcaaagcatccaaggcttgaat 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 taattttttaaagcaagcttgatagtttctagaatttgtcaaagcatccaaggcttgaat 322
Query: 123 ctgcagtggatcctcttgccttggtttcctgaatgttggtatgatgaacatgagccacag 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ctgcagtggatcctcttgccttggtttcctgaatgttggtatgatgaacatgagccacag 382
Query: 183 cgcctggtttactagattattttttaagagtataaacctagagtagtaaatatctatgaa 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 cgcctggtttactagattattttttaagagtataaacctagagtagtaaatatctatgaa 442
Query: 243 tacctctcttaattagggttattattgctgttata-----ttttttgaccaaaaacaatt 297
||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 443 tacctctcttaattagggttattattgctgttataaaacat-----gaccaaaaacaatt 497
Query: 298 tgggaaggaaagggcttatttcagtcaccttccatataacaatttgtcattaaaaagcag 357
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 498 tgggaaggaaagggcttatttcagtcaccttccatataacaatttgacattaaaaagcag 557
Query: 358 tgagggtaataacttaagcaggtcaggagactacaggcaggagctgatggagaggccgtg 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 tgagggtaataacttaagcaggtcaggagactacaggcaggagctgatggagaggccgtg 617
Query: 418 gaggagtgctggttactaccttgctcctattggctttgctcagcctgcttttcttata 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 gaggagtgctggttactaccttgctcctattggctttgctcagcctgcttttcttata 675
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 875
Length adjustment: 10
Effective length of query: 465
Effective length of database: 865
Effective search space: 402225
Effective search space used: 402225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no404_k20.g1 MSMg01no404_k20.g1 CHROMAT_FILE:
MSMg01no404_k20.g1 PHD_FILE: MSMg01no404_k20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:26 2005
(250 letters)
>mm_chr11_72739922_72740571
Length = 650
Score = 476 bits (246), Expect = e-139
Identities = 249/250 (99%)
Strand = Plus / Minus
Query: 1 attctttatagattaggcacatgtttccacgaccccttatgcctgccagttttgtctccg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 attctttatagattaggcacatgtttccacgaccccttatgcctgccagttttgtctccg 391
Query: 61 tccaggcagtcttgcctcctaagagtcaaggggatattggccttgatggcaatcctttgg 120
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 390 tccaggcagtcttgcctcctaagagtcaaggggatattggccttgatggaaatcctttgg 331
Query: 121 gacctcctgccccggctggggtcaggagacattggcctggctcagcagtgccacccagtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 gacctcctgccccggctggggtcaggagacattggcctggctcagcagtgccacccagtg 271
Query: 181 gcctagagaagcagaggcagtgggctgcaggtggccaggtcaggagggaccctgtccggt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 gcctagagaagcagaggcagtgggctgcaggtggccaggtcaggagggaccctgtccggt 211
Query: 241 cagagagcag 250
||||||||||
Sbjct: 210 cagagagcag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 650
Length adjustment: 9
Effective length of query: 241
Effective length of database: 641
Effective search space: 154481
Effective search space used: 154481
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
