GCGGGCGCTATACGACTCACTATTTTCAGAGGAGCCGCGGAANTCTCACC
TGATGCCTACCCAATGGCTGAGAAGCACCTGAAAAAATGCTCAGCATCCT
TAATCATCATAGAAATGCAAATCAAAACAACCCTGAGATTCCATCTCACA
CCAGTCAGAATGGCTAAGATCAAAAATTCTGGTGACAGCAGATGCTGGCG
AGAATGTGGAGAAAGAGGAACACTACTCCATTGTTGGTGGGATTGCAAGC
TTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAATTGGAC
ATAGTACTACGGGAGGATCCCGCAATACCTCTCCTGGGCATATATCCAGA
AGATGCTCCAACTTGTAATAAGGACACATGCTCCACTATGTTCATAGCAG
TCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACA
GAGGAATGGATACAAAAAATGTGGTACATTTACACAATGGAGTACTACTC
AGCTATTAAAAAGAATGAATTTATGAAATTCCTAGGCAAATGGATGGACC
TGGAGGGCATCATCCTGAGTGAGGTAACCCCATCACAACAGAACTCACAT
GATATGTACTCACCTGAAAGTGGAAATTTAGCCACGAACCTTTAGATACC
CCGAGAAATAAGAAACAATTTGCAAAACACATGAAACTGGGAGAAAAAAG
AAAAACCAAATGGGGGGAACCTTTGCCCCCTCCTTAAAATGGGAAAAAAC
CCCCCCGGGAGGAGGTTACTAACCAAAATT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTCTGAAGAGAATTAAAAAGGACAGCTGTCGAATGCTCA
GTACGGGCAATGAATGTCAACAATCAACACTCTGTAGAGCACACACACTT
TCTAGAGCTGCTAAGTATCCAACACTGGCCTTCCTGGGCCAGAAACATCC
AGAGAGGAATCATAAAGAGCTCCTTGCAAAGGATAGGGAACTCAGTGGCA
TGCCGAATGAGGACGAAGTCTTAGGCAAACATTAAAACAGCACATATATA
ATTTGAGAAAAGTATCTTCATAGAAATACCTCAAGATGGTGAAAGAAACG
TTAAAATATGGGCAGAAATATGCTACTTATATCCATATGCTTACAAAAAA
AGAGCAGTGATTAATTCTTGGTAGTCAGATGTCAACAATCTCTTATAAAT
CTTTAAAATCTGTGAACATTTTGAAAACACATGTACTACTTCTGTAGTTA
GAAAGGTTTTGAATTGTGCCAAAAGCACATAATGTTCGTTTAAGTCTACT
TAATATATAGTTACAAGCAGGGCACAGATTCCACTTTGACTGCAGTGGGC
TCATATCCCAGTAGATTCAACCTACATGAAAAATGTCTGAGGTGATACGT
GCACTGAACATATCCAACCAACTTCACGGTGCACCTGAGACATGGATCAC
TACAGAGGACTTCTTGTTTCCCTTGACCCCGAGACTCAGCCAGAACTGTG
GTCCATAT

Query= MSMg01no404_k22.g1 MSMg01no404_k22.g1 CHROMAT_FILE:
MSMg01no404_k22.g1 PHD_FILE: MSMg01no404_k22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:26 2005
         (571 letters)



>mm_chr11_11887704_11888675
          Length = 972

 Score = 1067 bits (552), Expect = 0.0
 Identities = 567/572 (99%), Gaps = 1/572 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgaagag-aattaaaaaggacagctgtcgaatgctcagtacgggcaatgaatgtcaac 59
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgaagagtaattaaaaaggacagctgtcgaatgctcagtacgggcaatgaatgtcaac 260

                                                                       
Query: 60  aatcaacactctgtagagcacacacactttctagagctgctaagtatccaacactggcct 119
           ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 261 aatgaacactctgtggagcacacacactttctagagctgctaagtatccaacactggcgt 320

                                                                       
Query: 120 tcctgggccagaaacatccagagaggaatcataaagagctccttgcaaaggatagggaac 179
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 321 tcctgggccagaaacatccagagaggaatcataaagagctccttgcaaaggacagggaac 380

                                                                       
Query: 180 tcagtggcatgccgaatgaggacgaagtcttaggcaaacattaaaacagcacatatataa 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcagtggcatgccgaatgaggacgaagtcttaggcaaacattaaaacagcacatatataa 440

                                                                       
Query: 240 tttgagaaaagtatcttcatagaaatacctcaagatggtgaaagaaacgttaaaatatgg 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttgagaaaagtatcttcatagaaatacctcaagatggtgaaagaaacgttaaaatatgg 500

                                                                       
Query: 300 gcagaaatatgctacttatatccatatgcttacaaaaaaagagcagtgattaattcttgg 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcagaaatatgctacttatatccatatgcttacaaaaaaagagcagtgattaattcttgg 560

                                                                       
Query: 360 tagtcagatgtcaacaatctcttataaatctttaaaatctgtgaacattttgaaaacaca 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tagtcagatgtcaacaatctcttataaatctttaaaatctgtgaacattttgaaaacaca 620

                                                                       
Query: 420 tgtactacttctgtagttagaaaggttttgaattgtgccaaaagcacataatgttcgttt 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgtactacttctgtagttagaaaggttttgaattgtgccaaaagcacataatgttcgttt 680

                                                                       
Query: 480 aagtctacttaatatatagttacaagcagggcacagattccactttgactgcagtgggct 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aagtctacttaatatatagttacaagcagggcacagattccactttgactgcagtgggct 740

                                           
Query: 540 catatcccagtagattcaacctacatgaaaaa 571
           ||||||||||||||||||||||||||||||||
Sbjct: 741 catatcccagtagattcaacctacatgaaaaa 772


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 972
Length adjustment: 10
Effective length of query: 561
Effective length of database: 962
Effective search space:   539682
Effective search space used:   539682
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)