BAC Information

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BAC

Clone NameMSMg01-405G04
Chromosome11 (Build37)
Map Location 78,914,531 - 79,129,486
singlet/doubletdoublet
Overlap geneKsr1, LOC100042697, Wsb1
Upstream geneBC017647, LOC100043525, Traf4, Nek8, Tlcd1, Rpl23a, Rab34, 4933404M19Rik, Supt6h, Sdf2, 2610507B11Rik, BC030499, LOC100043544, LOC100042648, Spag5, Aldoc, Pigs, Unc119, Foxn1, OTTMUSG00000000132, Slc13a2, Slc46a1, A830091I15Rik, Vtn, Og9x, AI316787, Poldip2, Tnfaip1, Ift20, Tmem97, Nlk, LOC100043570, LOC100042674, 1810009O10Rik, 1810012P15Rik, Nos2, Lgals9
Downstream geneNf1, Omg, Evi2b, Evi2a, Rab11fip4, OTTMUSG00000000185, LOC432584, Utp6, ENSMUSG00000072631, Suz12, Crlf3, Atad5, 1110002N22Rik, Centa2, Rnf135, Rhot1, Rhbdl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-405G04.T7 (MSMg01no405_g04.b1)MSMg01-405G04.TJ (MSMg01no405_g04.g1)
ACCAG503829AG503830
length782791
length of high quality
(start - end)		480 (73 - 552)330 (81 - 410)
definitionCHROMAT_FILE: MSMg01no405_g04.b1 PHD_FILE: MSMg01no405_g04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:21 2005CHROMAT_FILE: MSMg01no405_g04.g1 PHD_FILE: MSMg01no405_g04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,129,060 - 79,129,486)(78,914,531 - 78,914,860)
sequence
NNAATTTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCACTCCTTTCCCGAGTTTCCTGGCCAGAGCTGGCCCCTTGGC
AGTTACGAGTCACTAAATCTAGTGACTCTGTCTAATTCAGTCCACATCTT
ATTCAGTACAATAACCTATCACATAGGTGCTTCAGTGTGATTCTTGATTT
GCTAGCAAACAAAGCTTAAGAGACTAGGTTCTGAGTCATACCACACATGG
GTCCTAGCATCTATGACTGTCCGCTAGGCACCAGGTAACGGGGTCCACCC
TGGGCGAAAGAATGAAGGCAGCTATGATATATTCACTTAACAAGCCTGGC
CCATAACTTCCTCCCTTCCTCTCTCTTTCTTTCATTAGTGCATATTAATT
ATGTAAAATAACATATTTCATGAAGGCATTTTCATGTGTGCATATAATGT
ACTTCCTATATCCCTCCCCCATTAGTCTTTGTTGTCTCCTCTCCTCTCCT
GCCTCAAACACACCCTTTTCCTAGTCTCATTTCCCATCCCTTTTGGTGGT
TGTTGTTTAAAGCTTTGAAAGTTCTTTGATGTATGGTGTGCGCCGCGTTT
TTCTTTACTTCTTCCCCTTCTCTTTCCCTTATTATATTATTTTTTTTTTT
CCCCTGTTTTATCTTACTTCTCTCCCATCTTCTTCCACTCTTTTTCCTTT
TTTTTTTATTTTCCCAACCTTTCTATTCTATATCCTATTCTACTCTATTT
CTTTTGACATAGCCCCACTTTATTCTTCCTTC

CCTCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTTCCCACGTTACGTGGTC
TCTTCCCTGGGGTACTTGGTGGCACCCCAGACACCCCTTCCCTGAGGTAT
GGCTCACCAAGCCACCTTGAACTCACTGCTTCTTTGTTGATAGCACCGAA
AGCCACAGCCAAGTTCTGGCAGTCTGGAGTCTCAACCCACCTCAGATCCT
GCAGAAAACCTAGCCTCTAGGGTTCCAGAAGGCAGAGCATTACCCTGCCT
TTCTCAGCTGTGGGCCCCAGTATGTCACAGAGAACTTTGAGCTCCTGTCC
AGCAGTGCTCAACAGTTGAGGTACCCAGGAACACACCCTCTACTTCCAGA
CATGGTGGTGGTGGTGGTGGTGTTTCTCCTTTTTTTTTCCTCTTCCTCTT
TTTTCCCTTTAACCTCTCTTTTTTCACCTTTTTTTTTTCCCTTTCCCTTT
TACTACCCTCCCTTTTCTCTCCCCCCCCCTTTTTTCTTTTCTCTTTTTTC
TCTCTCCACTACACTTCTTCTTTTTCTTTTCTATCTTCTTTTTTTTACCC
TATTTTTTTCCCCATTCTTTATTTCCTCTTTATTCCCTTTTCTTCTTTTC
TTCTCTTTTTATTCCCTATTTCTCTTTCTTTTTTTTCTCTTACCCCCTTA
TGTTTTCCCCTCTCATTTCTCCTATTTTTTTTTTCTCTTCTTACTTTTCC
TCCTTCTTTACTACTTCTTCCCCCTTACCTTCCTTTCACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no405_g04.b1 MSMg01no405_g04.b1 CHROMAT_FILE:
MSMg01no405_g04.b1 PHD_FILE: MSMg01no405_g04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:21 2005
         (480 letters)



>mm_chr11_79129060_79129939
          Length = 880

 Score =  810 bits (419), Expect = 0.0
 Identities = 425/427 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtttcctggccagagctggccccttggcagttacgagtcactaaatctagtgactctgtc 60
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 427 gtttcctggccagagctggccccttggcagttacgagtcaccaaatctagtgactctgtc 368

                                                                       
Query: 61  taattcagtccacatcttattcagtacaataacctatcacataggtgcttcagtgtgatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 taattcagtccacatcttattcagtacaataacctatcacataggtgcttcagtgtgatt 308

                                                                       
Query: 121 cttgatttgctagcaaacaaagcttaagagactaggttctgagtcataccacacatgggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 cttgatttgctagcaaacaaagcttaagagactaggttctgagtcataccacacatgggt 248

                                                                       
Query: 181 cctagcatctatgactgtccgctaggcaccaggtaacggggtccaccctgggcgaaagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 cctagcatctatgactgtccgctaggcaccaggtaacggggtccaccctgggcgaaagaa 188

                                                                       
Query: 241 tgaaggcagctatgatatattcacttaacaagcctggcccataacttcctcccttcctct 300
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 tgaaggcagctctgatatattcacttaacaagcctggcccataacttcctcccttcctct 128

                                                                       
Query: 301 ctctttctttcattagtgcatattaattatgtaaaataacatatttcatgaaggcatttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 ctctttctttcattagtgcatattaattatgtaaaataacatatttcatgaaggcatttt 68

                                                                       
Query: 361 catgtgtgcatataatgtacttcctatatccctcccccattagtctttgttgtctcctct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67  catgtgtgcatataatgtacttcctatatccctcccccattagtctttgttgtctcctct 8

                  
Query: 421 cctctcc 427
           |||||||
Sbjct: 7   cctctcc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space:   408900
Effective search space used:   408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no405_g04.g1 MSMg01no405_g04.g1 CHROMAT_FILE:
MSMg01no405_g04.g1 PHD_FILE: MSMg01no405_g04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:21 2005
         (330 letters)



>mm_chr11_78914331_78915060
          Length = 730

 Score =  584 bits (302), Expect = e-171
 Identities = 323/330 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   agttcccacgttacgtggtctcttccctggggtacttggtggcaccccagacaccccttc 60
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agttcccacgttaggtggtctcttccctggggtacttggtggcaccccagacaccccttc 260

                                                                       
Query: 61  cctgaggtatggctcaccaagccaccttgaactcactgcttctttgttgatagcaccgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctgaggtatggctcaccaagccaccttgaactcactgcttctttgttgatagcaccgaa 320

                                                                       
Query: 121 agccacagccaagttctggcagtctggagtctcaacccacctcagatcctgcagaaaacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agccacagccaagttctggcagtctggagtctcaacccacctcagatcctgcagaaaacc 380

                                                                       
Query: 181 tagcctctagggttccagaaggcagagcattaccctgcctttctcagctgtgggccccag 240
           |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct: 381 tagcctctagggttccagaaggcagaacattaccctgcctttctcagctgtgggccccgg 440

                                                                       
Query: 241 tatgtcacagagaactttgagctcctgtccagcagtgctcaacagttgaggtacccagga 300
            | | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 441 caggccacagagaactttgagctcctgtccaacagtgctcaacagttgaggtacccagga 500

                                         
Query: 301 acacaccctctacttccagacatggtggtg 330
           ||||||||||||||||||||||||||||||
Sbjct: 501 acacaccctctacttccagacatggtggtg 530


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 730
Length adjustment: 9
Effective length of query: 321
Effective length of database: 721
Effective search space:   231441
Effective search space used:   231441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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