BAC Information

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BAC

Clone NameMSMg01-405L19
Chromosome11 (Build37)
Map Location 61,285,744 - 61,286,198
singlet/doubletsinglet
Overlap genenone
Upstream geneMyo15, Alkbh5, LOC100042448, LOC624403, LOC624424, OTTMUSG00000007757, LOC668206, Llgl1, Flii, Smcr7, Top3a, LOC100042517, Smcr8, Shmt1, LOC625958, LOC637900, Dhrs7b, Tmem11, Gtlf3b, Map2k3, Kcnj12, LOC668228, Tnfrsf13b, Usp22, LOC668239, Aldh3a1, Aldh3a2, 4933429E10Rik, 1300013J15Rik, LOC100042602, LOC626150, Zfp179
Downstream geneMfap4, Mapk7, 3110043A19Rik, Eppb9, Epn2, Grap, Slc5a10, 2310040C09Rik, Prpsap2, Ulk2, Akap10, D630015H07, LOC626325, LOC100041558, Specc1, Adora2b, 2410012H22Rik, Ttc19, Ncor1, Pigl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-405L19.T7 (MSMg01no405_l19.b1)MSMg01-405L19.TJ (MSMg01no405_l19.g1)
ACCAG504097AG504098
length820774
length of high quality
(start - end)		149 (74 - 222)455 (76 - 530)
definitionCHROMAT_FILE: MSMg01no405_l19.b1 PHD_FILE: MSMg01no405_l19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:48 2005CHROMAT_FILE: MSMg01no405_l19.g1 PHD_FILE: MSMg01no405_l19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCTTTTCTGTGTGCGTTAAANGAATTACTATTACAACAAAATCCGAGG
AATTCAAGACTCTTCCGCCACTTACCCCATAAAAACCCCTAGCTTTCGAG
CCTCGTGGCCGACATCTGTTATCTCCTGTGTGGGATGCATGTCGGTCTGG
AACTCCATCATTAAACGACCTCATATAATTACATCAAGGTGTTCTGTTCT
GCTCTGTTCGTGATTCTTGGGTGCACGCCATATCTGTTATTGAGCGGTGT
TTTCCCCTCTATGTTCTATCACTCTCACCTTATTCCACTCAGTGAGTTCC
AGTCAGCCTGAGCTACTTGTTTTTTATCTTACCTCAAGTAAAATAAATTA
TTTATGGTGGTGTACACCTTTAATCTTAACATCCAGGAGGCATTAGTCTA
GCTGTTTCTCTTGAATTTGAGACTATTCTGTTTCTATATTTTGTATTTCT
ATGACATCCATTCCTCGTTTCTATAAATTATGTCTTTGAAAAGTCCACCC
CCACTCAATCTAATATTCCATTTTCATTATTTATATCTTTACACCTTTTA
CCTTTTATTCTTCTTCCACCCCTTTTTTATCATTTCTTTTTCTTCACCTT
TTGTCCGCTCAGCTTTATTTCCGTTATAATGACTTTGTCTCAACTAAGTT
TTATCATATTTTCTTTTTATTTTTTCAATATGTCTTTCCTTATATTTTTT
TTCTCCTATATACCTTTTCACCGCCTTTCTTTCCTTTTATTTTCTTCCCT
CCCTACTTATTATTTTTTTCTTTAAATATCCCACTTTTCCCCCCAAGATA
CTACTTTTAGCTCTCTACCC

CGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGGGCAAAACATGTCCGAATTAAAT
TTCTGAAAATTAGGCCAAGAAAAAATACTGACATCAGAGAAGCAAAGCCT
TTACCTACAGGAGGGAAACAGAGTGAGTGAATAGCACAGAGTTCCTCTTC
TCGTCCACAGAGCCCTTCTTATCGTAGTCATTTTGTAAAATAAAATTACC
AGGTCCACATGGTTTATCGGGAGGTTTCTACCAAATGTTCAAAGTATTCG
CACAAATTCCATATATTGTGTTCTATAAAGCAGAAAGATAAATTCACTTC
TCAATTCACTAGGAAGTCAGTATAGTCCTGTGATGCAACCACAAACAATA
TTTTTAAAATCCAGACAAATATGGACTGAGACCTTTTTTTTTTTAAATTA
GCAAATAGAATCCAGTAAACACCTTAAAATCCTTAAGAGGCTGCTGTAGC
TGGGTGGAGGGGCACAGGTTTATCATGGACAAGCCACTTAAATTCAATCC
TTAGTCCCCTTAACAAAAAGAAAGAATTATACTCTATTTTACCATTAATC
CGAGGAAGGATAGATTGGCTTAATATTCCCAAAGAAGCAATCCTCATTGA
CACCTGATTTATGAAGAAAACCACCTAATTATATCATTTGGTATAGAAAA
ACCGGAACAAATTTCGTTACCGAAATCGGTTTTTTCCCCTCGCGATTTTA
TATAAACTCTTACTTGTTCCGAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no405_l19.g1 MSMg01no405_l19.g1 CHROMAT_FILE:
MSMg01no405_l19.g1 PHD_FILE: MSMg01no405_l19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:48 2005
         (455 letters)



>mm_chr11_61285543_61286398
          Length = 856

 Score =  859 bits (444), Expect = 0.0
 Identities = 453/456 (99%), Gaps = 2/456 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agggcaaaacatgtccgaattaaatttctgaaaattaggccaagaaaaaatactgacatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 agggcaaaacatgtccgaattaaatttctgaaaattaggccaagaaaaaatactgacatc 261

                                                                       
Query: 61  agagaagcaaagcctttacctacaggagggaaacagagtgagtgaatagcacagagttcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 agagaagcaaagcctttacctacaggagggaaacagagtgagtgaatagcacagagttcc 321

                                                                       
Query: 121 tcttctcgtccacagagcccttcttatcgtagtcattttgtaaaataaaattaccaggtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tcttctcgtccacagagcccttcttatcgtagtcattttgtaaaataaaattaccaggtc 381

                                                                       
Query: 181 cacatggtttatcgggaggtttctaccaaatgttcaaagtattcgcacaaattccatata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 cacatggtttatcgggaggtttctaccaaatgttcaaagtattcgcacaaattccatata 441

                                                                       
Query: 241 ttgtgttctataaagcagaaagataaattcacttctcaattcactaggaagtcagtatag 300
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 t-gtgttctataaagcagaaagataaattcacttctcaattcactaggaagtcagtatag 500

                                                                       
Query: 301 tcctgtgatgcaaccacaaacaatatttttaaaatccagacaaatatggactgagacctt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcctgtgatgcaaccacaaacaatatttttaaaatccagacaaatatggactgagacctt 560

                                                                       
Query: 361 ttttttttt-aaattagcaaatagaatccagtaaacaccttaaaatccttaagaggctgc 419
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttttttttttaaattagcaaatagaatccagtaaacaccttaaaatccttaagaggctgc 620

                                               
Query: 420 tgtagctgggtggaggggcacaggtttatcatggac 455
           ||||||||| ||||||||||||||||||||||||||
Sbjct: 621 tgtagctggatggaggggcacaggtttatcatggac 656


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 856
Length adjustment: 10
Effective length of query: 445
Effective length of database: 846
Effective search space:   376470
Effective search space used:   376470
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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