BAC Information

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BAC

Clone NameMSMg01-406I02
Chromosome11 (Build37)
Map Location 59,338,036 - 59,338,204
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr330, Olfr329, Olfr328, Olfr327-ps1, Olfr325, Olfr324, 2210407C18Rik, Olfr323, Trim58, Olfr216, OTTMUSG00000005755, Olfr320, LOC668058, Olfr319, Olfr318, Olfr317, Olfr316, Olfr315, Olfr314, 3100002J23Rik, Olfr313, Olfr312, GA_x5J8B7W3UM0-1747565-1747342, Olfr311, 2810021J22Rik, Zfp39, Butr1, Rnf187, LOC676691, Hist3h2ba, Hist3h2bb, Hist3h2a, LOC382523, Trim17, Trim11, Obscn, A230051G13Rik, 4930543L23Rik, Gja12, Guk1, Mrpl55, 2310033P09Rik, Arf1, Wnt3a, Wnt9a, Gm249, 1110031B06Rik, Jmjd4, BC050078, LOC432565, Zkscan17
Downstream geneNlrp3, Olfr222, LOC668157, Olfr223, GA_x5J8B7W3UM0-970645-971221, Olfr225, AA536749, 4933433K01Rik, Flcn, Cops3, Nt5m, Med9, Rasd1, Pemt, Rai1, Srebf1, Tom1l2, LOC667892, Lrrc48, Atpaf2, 4933439F18Rik, LOC674310, Drg2, Myo15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-406I02.T7 (MSMg01no406_i02.b1)MSMg01-406I02.TJ (MSMg01no406_i02.g1)
ACCAG504685AG504686
length740771
length of high quality
(start - end)
405 (71 - 475)169 (83 - 251)
definitionCHROMAT_FILE: MSMg01no406_i02.b1 PHD_FILE: MSMg01no406_i02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:50 2005CHROMAT_FILE: MSMg01no406_i02.g1 PHD_FILE: MSMg01no406_i02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGG
AATTCAAGGAGNTTACCGAAGACAAAAATAAACAACTTGATATTAAGGAA
AATGCTTAAGGTTATTCTTCTCATTGATAGCCAAGAAAACACAAAAACAC
CTTATATTTTAAAACAGGCACCATGTTAGAGTAAAGGATAGATAAAAATA
CTTTATCAAATGGGATCGGAAGGAAGCAAGCAAGCACCATTATATTAATT
TATGAGAAACAGACTTTAAACTAGAACTAATCAGAAGAGAGAAAGAGGTA
TCTTTCATTCTAATCAAGGTAATAACTACTCAAAAAGGCATTACTATCTT
AAACATATATTCATCAAACATATCTGAGGCACCAAATTTCATTAAAAATC
TATTACTGGGTTTAGAGACACACATTAATTCTCATTAATAGTGAGTACTC
CATTTCAATATCCCATTTTCTCTAGTAGATGGGTCATCTGGACAAAAAAA
AAAGGTAAACATCAGAATTAACTGATATATCAAGTGGAATTTAACAGGTA
TCTATAGTAAATTCCACCCTTTTTAAGGTTTATTTATTATATGTAAGTAC
ACGGCAGTTGTCTTCAGATACTCCAGATGAGGGAGTCAGATCTTTGTTAA
GAATGTTTGTGTACTCCCATGTGTCTGCTCATGGTTTGCAACTCTTTACC
TTTTTTGTTATTTTCCTTGGTCTTAACTTGCCTACCATCT
TTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTTTCCTAAAATACGTCGGTGAGAGACTGATGCTGA
GAAGCAAAACGAAGCTCACACGGTGTAACGTTTAGTGATACTGGAAGTTT
TGTGAGCTGTCAGTTTAAACCACCAGAATATGGAACTCAGTCTTAACAAT
CTCTTAGGTCTTACTCCTTTCAAACTTTTTACTCAATGAATTACTTTCAG
AAAAATATTTATGCAAGTAGGGGAACATTTGTCCACTAGTAAAGTTATCC
TTTACTTCCTCTGTATTGTGAGTTTTTTTTTTTGGCGCAGCAGAGCCTGT
AACAGCAAGGGCGTTAATATTATGAGGTTGCACCTTTTCTGTACAGCCCA
ACAAAGTTAAGGGTGATCCGTCCCATGGTCGGCCTCTGCAGTTTTCTGTG
ATTCATCCCCTTGCCTGTTCAGTGACTTGTGACTATGGAGGCAGCCGTTC
GCCCCCCTGTTTTTATTTCTCTCCTTACTCTTTTCCTCTCTTCACTTTCT
TCTACCTTTCATCTCTTCTTTTCTTTCTGACTTCTTTCCTGTGTCTTCAT
TTCCTCTCCCTCGCCAATTTTTTCTACTTATCTTTTTCCTTTCTTTTCAT
TTTTTCCTGTTACCCTGTTCTCTTCTTTTTTCCCCCCCATCCCTCCTTTT
CTCTTTTTCTTCTGTTCTTCGTCCGCGCCCCCCCTCCCTTATCCCACTTC
TTTTCCTTCTCCTCCCTCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no406_i02.g1 MSMg01no406_i02.g1 CHROMAT_FILE:
MSMg01no406_i02.g1 PHD_FILE: MSMg01no406_i02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:50 2005
         (169 letters)



>mm_chr11_59337836_59338404
          Length = 569

 Score =  319 bits (165), Expect = 5e-92
 Identities = 168/169 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtgagagactgatgctgagaagcaaaacgaagctcacacggtgtaacgtttagtgatact 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 gtgagagactgatgctgagaagcaaaacgaagctcacacggtgtaaggtttagtgatact 260

                                                                       
Query: 61  ggaagttttgtgagctgtcagtttaaaccaccagaatatggaactcagtcttaacaatct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggaagttttgtgagctgtcagtttaaaccaccagaatatggaactcagtcttaacaatct 320

                                                            
Query: 121 cttaggtcttactcctttcaaactttttactcaatgaattactttcaga 169
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttaggtcttactcctttcaaactttttactcaatgaattactttcaga 369


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 169
Length of database: 569
Length adjustment: 8
Effective length of query: 161
Effective length of database: 561
Effective search space:    90321
Effective search space used:    90321
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)