BAC Information

Click to search

BAC

Clone NameMSMg01-406N12
Chromosome11 (Build37)
Map Location 33,353,867 - 33,354,055
singlet/doubletsinglet
Overlap geneRanbp17
Upstream geneUbtd2, 1700007I06Rik, Stk10, Fbxw11, LOC666616, 1700008A04Rik, LOC666620, LOC670035, LOC432548, Fgf18, Npm1, LOC666646, Tlx3, LOC666258, Anp32c, LOC669306, LOC666269
Downstream geneGabrp, D130052B06Rik, Kcnip1, Kcnmb1, Lcp2, Foxi1, Dock2, EG574403
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-406N12.T7 (MSMg01no406_n12.b1)MSMg01-406N12.TJ (MSMg01no406_n12.g1)
ACCAG504943AG504944
length758715
length of high quality
(start - end)
191 (120 - 310)---
definitionCHROMAT_FILE: MSMg01no406_n12.b1 PHD_FILE: MSMg01no406_n12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:22:17 2005CHROMAT_FILE: MSMg01no406_n12.g1 PHD_FILE: MSMg01no406_n12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:22:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAAATTTGCGGCCGCTAAAGAACACTAATTACCTACCTCCGCGGNAATCT
TTGCTTTTTCTATCACCAGAGANNANGNNAGANCTCTAGATTTATCAATA
GAAGTATGATATTCTCTAAAACTTTTGAGACCTGCAGAAATATAAAAATG
TCATTTCACAGAGAAATTTTGTCATTATTGAAAACTGATTTTTCAAAGAT
GAGCAAACTATTTCACAATTCCAAAATTAATTATGTTTCTTTTATTAAGA
AATCTTGGTGGCTATGGCATCCACACGGTAGCTCACAACTCCCTATTACT
CCAGTTCCTTTGCTTGTTTATGCCCACTTCTGATCTCCATAGGCACCAGA
CATGCACATGATGCAAATTCATATGTGCAGGCAAAATACTCATACATATA
AAAGCAAATCTAAAAAAAAAAATCTCTCCATGTGACCTTTGTAGTTGTTT
AAATACATGGAATAGTTGAGGAAAAAGTCGGTGCTTGTTGAAGGACTTGA
GGAGAACAAATACATTCCACAAGCTTTTCCTGCAGATGTCAGCACTCAGG
ATTATACTGCGCAATCAGTAAAGCACTCCCTGGTAACCGCAGACTATCTG
TAACCTGCTTCAATGACAAAAACTCCATAAATGAGAAAAATAATTTGTTT
TTTTTACACCCTCTTTTGTCTATCCCCGAATCTTTGAACAATTCCAAAAC
CTGCCCATTTTTGCATAGCATCCATTTCACAATTTGAATCCCCCTACAAG
TGTAACAT
TTCTTTGNNNNCCCCGNNNNCCGCCCGNCTGCAAAATTTAGNTGACCTAN
ANAAGGTTTCGAAAATTCTCGAACTCATANNGACAANAAATCAACNCTGC
TTTTTCTNNCCCACCNANNNNGATGNAAAGTCAATTCTATTANTCACTAN
NNNAACCCNNNNNANCCNACTGNGACCCCCCTATCCTANCCACCTAACTC
TGNTAAAAACCTTTACTTCNNGCTTTTTACCNNCNGCNNNANCCCCACTT
ACCCCCTGCACGNNNNNCGCGNCAAAACGCNNNNNNTTTTATCCTTCACT
NTATTCCNNNNNNCACCCCTCNNNNNNACTTCCCTCTCCCCCCCTTAAAT
NTTCCCCCCCCCCTTANNCAAAAAATTCCCCCCGGATTTTTAAAAAAAAT
ATAAAATAAAAAAAAATAATAAAAAAGAAAAGGGAATGGGAGGTAAAAAG
GGGGGGGGCTGNCNNCTCTCCTNTNTCTTTTTTCCACCCCTTTTTCCTCC
CNCCCCCCCCCCCCTCCNNNCTTTTTTTTACCTTNCCNTTCCCACCACTC
CTCCTCTTCCCCTTTTTTTCCTCNNTACTCATTCAACGATTTCCCNTTTT
TNNTCCCNCCCCCNNCCCTCACCCCCCCCCCCCCCCCCCCCCCTCCCTTT
TTCTTCTAATTTTAAGAAACACTTTTNTNTTCCCTNNTTCTCTTTTTCCT
TTTTTTTTTCTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no406_n12.b1 MSMg01no406_n12.b1 CHROMAT_FILE:
MSMg01no406_n12.b1 PHD_FILE: MSMg01no406_n12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:17 2005
         (191 letters)



>mm_chr11_33353667_33354257
          Length = 591

 Score =  350 bits (181), Expect = e-101
 Identities = 187/189 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacttttgagacctgcagaaatataaaaatgtcatttcacagagaaattttgtcattatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacttttgagacctgcagaaatataaaaatgtcatttcacagagaaattttgtcattatt 260

                                                                       
Query: 61  gaaaactgatttttcaaagatgagcaaactatttcacaattccaaaattaattatgtttc 120
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 gaaaactgatttttcaaagatgagcaaactattttacaattccaaaattaattatgtttc 320

                                                                       
Query: 121 ttttattaagaaatcttggtggctatggcatccacacggtagctcacaactccctattac 180
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttattaagaaatcttggtggttatggcatccacacggtagctcacaactccctattac 380

                    
Query: 181 tccagttcc 189
           |||||||||
Sbjct: 381 tccagttcc 389


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 191
Length of database: 591
Length adjustment: 8
Effective length of query: 183
Effective length of database: 583
Effective search space:   106689
Effective search space used:   106689
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)