Query= MSMg01no407_b09.b1 MSMg01no407_b09.b1 CHROMAT_FILE:
MSMg01no407_b09.b1 PHD_FILE: MSMg01no407_b09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:38 2005
(629 letters)
>mm_chr11_72693465_72694493
Length = 1029
Score = 1116 bits (577), Expect = 0.0
Identities = 616/645 (95%), Gaps = 26/645 (4%)
Strand = Plus / Plus
Query: 5 gaattctaggatagacagttccaggactatccagaggacacctctgacacacacacacac 64
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 gaattctaggacagagagttccaggactatccagaggacacctctgacacacacacacac 238
Query: 65 acacacacacacacacacac------ctcaaaaaaaaaagtaaaaagaaaagtttaatac 118
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 239 acacacacacacacacacacacacacctcaaaaaaaaaagtaaaaagaaaagtttaatac 298
Query: 119 taa--------------------cagcttgggggccatgttggtttggagaaggctaact 158
||| |||||||||||||||||||||||||||||||||||||
Sbjct: 299 taaagtcatcaataaagaaagaacagcttgggggccatgttggtttggagaaggctaact 358
Query: 159 gaggtaacttatggaaggtgtgtaacatacatagcatggcacgctcgtggagtggggtgg 218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 gaggtaacttatggaaggtgtgtaacatacatagcatggcacgctcgtggagtggggtgg 418
Query: 219 gtgctttgtttgattaacagatgagtagttgtcaactctgtacttctgctggactgttct 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 gtgctttgtttgattaacagatgagtagttgtcaactctgtacttctgctggactgttct 478
Query: 279 ctcaacccaactggacttgaatgtcactgtccctgtttccctccaagtcatttaactggt 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 ctcaacccaactggacttgaatgtcactgtccctgtttccctccaagtcatttaactggt 538
Query: 339 tgctttttggttgttttgtgtaagaaattgagatcaataagttgcagctgatggtgtctt 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 tgctttttggttgttttgtgtaagaaattgagatcaataagttgcagctgatggtgtctt 598
Query: 399 ctgtttccagttactttggacacttggaaggctgtggtgctgatctacacagagaaatcc 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 ctgtttccagttactttggacacttggaaggctgtggtgctgatctacacagagaaatcc 658
Query: 459 gagacacttactatcaacttgttctgtttttggtcaaagcaatcaaaagatttagtagca 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 gagacacttactatcaacttgttctgtttttggtcaaagcaatcaaaagatttagtagca 718
Query: 519 tgaatgacaggtactggattacctttatatttcttgagggaaaaaatgtatcttttttct 578
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 taaatgacaggtactggattacctttatatttcttgagggaaaaaatgtatcttttttct 778
Query: 579 aattataaatgaaatacatatttgaagttgaaaatcaaaaaaaaa 623
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 aattataaatgaaatacatatttgaagttgaaaatcaaaaaaaaa 823
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 52
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1029
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1019
Effective search space: 630761
Effective search space used: 630761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no407_b09.g1 MSMg01no407_b09.g1 CHROMAT_FILE:
MSMg01no407_b09.g1 PHD_FILE: MSMg01no407_b09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:38 2005
(535 letters)
>mm_chr11_72881002_72881936
Length = 935
Score = 961 bits (497), Expect = 0.0
Identities = 522/535 (97%), Gaps = 8/535 (1%)
Strand = Plus / Minus
Query: 1 cagagttaagtaaaaggggaggtcaaaaggggaagggaggggatgtgtgaacaagaagag 60
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct: 605 cagagttaagtaaaaggggaggtcaaaaggggaaggaaggggatgtgtgaacaagaggag 546
Query: 61 gattaaatgggacccaagtgcatcacaggcatgcaggctaacagtgaaataaagacacac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 gattaaatgggacccaagtgcatcacaggcatgcaggctaacagtgaaataaagacacac 486
Query: 121 taacaaatacaaatgtaaatgaaattccccctcagtcagtaagctgctttttcataaatt 180
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 taacaaacacaaatgtaaatgaaattccccctcagtcagtaagctgctttttcataaatt 426
Query: 181 atttgtttaaaaggagctttggcattatttgaactcgcttctagtcaacagctaagtttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 atttgtttaaaaggagctttggcattatttgaactcgcttctagtcaacagctaagtttt 366
Query: 241 attcagtaatttcatcattctgaccaaaaatcaataccaaagatcaagtttaccttttgt 300
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 actcagtaatttcatcattctgaccaaaaatcaataccaaagatcaagtttaccttttgt 306
Query: 301 agcaaatctcatgaatagtctatttcctttagcaagtttgttagctggacgaagatcatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 agcaaatctcatgaatagtctatttcctttagcaagtttgttagctggacgaagatcatt 246
Query: 361 tcgtaacagagactcttcttctacctgagacaacgtgtccaacttaaaagacnaaaaaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 tcgtaacagagactcttcttctacctgagacaacgtgtccaacttaaaagac-------- 194
Query: 421 aaaaaaaaaaaaaaaggagaacactttcaacataaaactccagcatttttcatacttttt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 aaaaaaaaaaaaaaaggagaacactttcaacataaaactccagcatttttcatacttttt 134
Query: 481 ctgtgcagttcccattaagaagctttctgcccatcagtgtcacagcatctattcc 535
||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 133 ctgtgcagttcccattaagaagccttctgcccatcagtgtcacagcatctattcc 79
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 935
Length adjustment: 10
Effective length of query: 525
Effective length of database: 925
Effective search space: 485625
Effective search space used: 485625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
