BAC Information

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BAC

Clone NameMSMg01-407D19
Chromosome11 (Build37)
Map Location 68,857,129 - 68,857,504
singlet/doubletsinglet
Overlap genenone
Upstream geneStx8, Ntn1, Pik3r5, BB220380, BC024997, Ccdc42, Myh10, Ndel1, 9930039A11Rik, Rpl26, Odf4, Arhgef15, Slc25a35, 2400006H24Rik, Pfas, 1500010J02Rik
Downstream geneAurkb, 2310047M10Rik, Tmem107, Vamp2, Per1, Hes7, Aloxe3, Alox12b, Alox8, Gucy2e, Cntrob, Trappc1, Kcnab3, A030009H04Rik, Chd3, Cyb5d1, Lsmd1, Tmem88, Jmjd3, Dnahc2, Efnb3, Wdr79, LOC100043030, Trp53, Atp1b2, Shbg, Sat2, LOC382532, Fxr2, Sox15, Mpdu1, Cd68, Eif4a1, Senp3, Tnfsf12-tnfsf13, Tnfsf13, Tnfsf12, LOC100041994, Polr2a, Amac1, Zbtb4, Chrnb1, Fgf11, Tmem102, 4933402P03Rik, 1700095G12Rik, Nlgn2, 1810027O10Rik, Plscr3, Tnk1, LOC432576, Kctd11, Centb1, 2810408A11Rik, 0610025P10Rik, Gps2, Eif5a, Ybx2, Slc2a4, LOC668442, Cldn7, Rai12, Dullard, Gabarap, Phf23, Dvl2, Acadvl, Dlg4
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-407D19.T7 (MSMg01no407_d19.b1)MSMg01-407D19.TJ (MSMg01no407_d19.g1)
ACCAG505243AG505244
length770774
length of high quality
(start - end)		102 (61 - 162)376 (76 - 451)
definitionCHROMAT_FILE: MSMg01no407_d19.b1 PHD_FILE: MSMg01no407_d19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:22:49 2005CHROMAT_FILE: MSMg01no407_d19.g1 PHD_FILE: MSMg01no407_d19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:22:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAATTTGCGGCCGCTAAACAACTCCTATTTCCAGAGGATCCGCGGAATTC
AAAGATTACACATGTGCCACCAGCGGGCCTCAATTATTAAAACCTCAACA
ATTGAAACTTCAAACAGAGTGAGNTNGCCTGACAGAAGCCACTGTGAGGA
CAACAGAATTGTTTCCGGTTATGGCATTTTGTGTCAGTGGNNNNNNCTAA
TGGGCTCGCNNACCCAAGAAGAAGTACNNNCAGATGNACCTCTGNATGCA
TGCTNNNNNTGACTGAACCAGACTGCTTGCCCTGGGTCAGTCTGCGAACA
NCTGAGACCTTTTGGCTCCCACTGTGANAGTGCTGGGNTTACAAACCTGT
GCCCATATCGNCNNNNNNATAAACCTNNAAAAAAAAATAAACCCCGGCCC
TTTTTGANNNTGTCTCCCCCACCCAAACATAATTNNGTGTTGTTTCCTCC
GNNCCCCCCCCCNTTTTAGATGTGTCCCCCGAAAAGGAATTTGCTGGGGG
TTTCGGCTGGGGGGGGGGGGGGGGGGGGGGGAAATCANNTTTTCCCCACA
ACCCTANNAAATTATAATTCCCCCCCNAAAAACAACCAANCAAAACCNNA
ACCCCCCACCTCTCTTTTCATAAANNTTTAATTTGGTTTTGTGTTATTAC
CCCCCCCCGCCCCCCCCCGGGGGGGGTTTTTTTTTTCCCTCTTTCCCCTT
TCCNCNNCCATTCATAAAAAAAAAAATAATCCANATCCCTTTCTCTTTAT
TTTCTTCCACTCTCTGTGGG

CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTCATCTGGAACCCCTGCCACACGA
CAGAGCTATAGTTAGTGGAGCAAAGAAGAGTTAGGACAGGAAGCCATCTT
TCTGGGAAGACAGGGCTTGTGGGCATTTGTGTGTGTGTAGTGGGGAGACG
GGTTGGGTAGCAGAGTTTGCTAGCTTGGGTTTCTCTTTCACTTCCTGTTT
TGTTCTGCTGTTTTGGTTTTTTGGTTTTTTCCTTTTAAAAACAACTTGAA
GGCTGAAAACTTAGTGGTTCTGGCCCCCAGAGAGAAGATGGGAGAAGTAA
CATTTATAGTCAGGGTTGACCAAAAGCACTTTAAGAAATATGGACCCACT
CTATGGTGGCTCGTTCATACCTGTAATCCCAGCACTTTGGAGGCAGAGGC
AGGGGGATCACTCCAAGCACTAGACCAATGTGATTTGCACAGTATATTCC
AAGCCAGGATTACTAAATAGTAAAATAATAATTACCTACCTGATCTTCTG
GACTTTAATTTTACTTTATTGGACTTTTCCCGTCTATTTTTTTGACCTTC
TCCCGGTTCTTTATCATTCTTTTGATCTAATTCCCGCCTTATTTCCCTTT
TTTTTCCCGCCCCTTCCCCGTGTTTTCAGTCTACTTTTATCCTCTCCCAC
ACCCTGTCTTGTAGTGGGGTTGTACACTTCTCATATAGTCCTAATTTCTT
TCTTTATTTTTCTCCCCCCTCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no407_d19.g1 MSMg01no407_d19.g1 CHROMAT_FILE:
MSMg01no407_d19.g1 PHD_FILE: MSMg01no407_d19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:49 2005
         (376 letters)



>mm_chr11_68856975_68857750
          Length = 776

 Score =  681 bits (352), Expect = 0.0
 Identities = 370/376 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcatctggaacccctgccacacgacagagctatagttagtggagcaaagaagagttagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 ctcatctggaacccctgccacacgacagagctatagttagtggagcaaagaagagttagg 471

                                                                       
Query: 61  acaggaagccatctttctgggaagacagggcttgtgggcatttgtgtgtgtgtagtgggg 120
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 470 acaggaagccatctttctgggaagacagggcttgtgtgcatttgtgtgtgtgtagtgggg 411

                                                                       
Query: 121 agacgggttgggtagcagagtttgctagcttgggtttctctttcacttcctgttttgttc 180
           ||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct: 410 agatgggttgggtagcagagtttgctagcttgggtttctctttcacttcctgcttagttc 351

                                                                       
Query: 181 tgctgttttggttttttggttttttccttttaaaaacaacttgaaggctgaaaacttagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 tgctgttttggttttttggttttttccttttaaaaacaacttgaaggctgaaaacttagt 291

                                                                       
Query: 241 ggttctggcccccagagagaagatgggagaagtaacatttatagtcagggttgaccaaaa 300
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct: 290 ggttctggcccccagagagaagatgggagaaataacatttatagtcagggttgtccaaaa 231

                                                                       
Query: 301 gcactttaagaaatatggacccactctatggtggctcgttcatacctgtaatcccagcac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 gcactttaagaaatatggacccactctatggtggctcgttcatacctgtaatcccagcac 171

                           
Query: 361 tttggaggcagaggca 376
           ||||||||||||||||
Sbjct: 170 tttggaggcagaggca 155


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 376
Length of database: 776
Length adjustment: 9
Effective length of query: 367
Effective length of database: 767
Effective search space:   281489
Effective search space used:   281489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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