Query= MSMg01no407_h11.b1 MSMg01no407_h11.b1 CHROMAT_FILE:
MSMg01no407_h11.b1 PHD_FILE: MSMg01no407_h11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:07 2005
(634 letters)
>mm_chr11_68385829_68386862
Length = 1034
Score = 1035 bits (535), Expect = 0.0
Identities = 553/561 (98%), Gaps = 5/561 (0%)
Strand = Plus / Minus
Query: 5 gaattcttaatatttttatcatttttgagccagttggagtttatcttggcatatattata 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gaattcttaatatttttatcatttttgagccagttggagtttatcttggcatatattata 501
Query: 65 aagcaggataaaactttttgccttgtctgatggttgtccagccattttcaaatgacttct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aagcaggataaaactttttgccttgtctgatggttgtccagccattttcaaatgacttct 441
Query: 125 agaataacccttcttcaagtaacaaaattcttccattcggctaattagcccattcacatg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 agaataacccttcttcaagtaacaaaattcttccattcggctaattagcccattcacatg 381
Query: 185 cttttacagatggaggctttccacctgtctgatagatctgggcttgcctcgagcttcctt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cttttacagatggaggctttccacctgtctgatagatctgggcttgcctcgagcttcctt 321
Query: 245 ttcagccttcatggctgctttcgaaccagcttttctagtttcactaacatttatacatct 304
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 320 ttcagccttcatggctgctttcgaaccagcttttctagttccactaacatttatacatct 261
Query: 305 agacaaagcaacaacaacaaaacaaccaatgaaactaagtaaatgtttttactacaggga 364
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 260 agacaaagcaacaacaacaaaacaaccaatgaaactaggtaaatgtttttactacaggga 201
Query: 365 tggagagatggctcagtgcttaacagcactggctgctcttccagaggtcctgagttcaat 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 tggagagatggctcagtgcttaacagcactggctgctcttccagaggtcctgagttcaat 141
Query: 425 tcccagcaaccacatggtggctcacagccatctgtaacgggatccgatgccctctttctg 484
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 140 tcccagcaaccacatggtggctcacagccatctgtaacgggatccgatgccctc-ttctg 82
Query: 485 gtgtgtctgaagacagcgacagtgcactcatataccta----aaataaacaaataaatct 540
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 81 gtgtgtctgaagacagcgacagtgcactcatatacctaaaataaataaacaaataaatct 22
Query: 541 ttaaaaaatctatttggcatt 561
|| ||||||||||||||||||
Sbjct: 21 tttaaaaatctatttggcatt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1034
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1024
Effective search space: 638976
Effective search space used: 638976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no407_h11.g1 MSMg01no407_h11.g1 CHROMAT_FILE:
MSMg01no407_h11.g1 PHD_FILE: MSMg01no407_h11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:07 2005
(502 letters)
>mm_chr11_68267031_68267935
Length = 905
Score = 946 bits (489), Expect = 0.0
Identities = 500/505 (99%), Gaps = 3/505 (0%)
Strand = Plus / Plus
Query: 1 taggcgtcccctgacagctgaggagattttagtcatgggataatccagaagtttcatctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taggcgtcccctgacagctgaggagattttagtcatgggataatccagaagtttcatctt 260
Query: 61 ggctctcactggttacaggtcttgagaaaaatggcttaatctctcagatccatgcttctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggctctcactggttacaggtcttgagaaaaatggcttaatctctcagatccatgcttctc 320
Query: 121 acacgccaaatggaaataaataacgccctgaaggattgttcctagctaggcaccaggcag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acacgccaaatggaaataaataacgccctgaaggattgttcctagctaggcaccaggcag 380
Query: 181 gagagaagtttcctcagaggcaggaggcctgtgactgcagcagcagcttacttaagccca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagagaagtttcctcagaggcaggaggcctgtgactgcagcagcagcttacttaagccca 440
Query: 241 ggcgattcaagcatgattcttttctgttacagaggagtcactaggctcggttctcttctg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggcgattcaagcatgattcttttctgttacagaggagtcactaggctcggttctcttctg 500
Query: 301 ttcatgtggaaggacgctcttggatctcacctggaaaatgcttttcatccttttctttgc 360
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttcatgtggaaggacactcttggatctcacctggaaaatgcttttcatccttttctttgc 560
Query: 361 tcggctggagtcttaggtatttcccaggcctgaattttgacatatgagtatggttattga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcggctggagtcttaggtatttcccaggcctgaattttgacatatgagtatggttattga 620
Query: 421 agaaatacttagggcgtatccacatgataaaacacgtgatcctagaaaacatgttaagcg 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 621 agaaatacttagggcgtatccacatgataaaacacgtgatcctagaaaacatgttaagtg 680
Query: 481 agaaaaaaaaa---caaaaacaaat 502
||||||||||| |||||||||||
Sbjct: 681 agaaaaaaaaaaaacaaaaacaaat 705
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 905
Length adjustment: 10
Effective length of query: 492
Effective length of database: 895
Effective search space: 440340
Effective search space used: 440340
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
