Query= MSMg01no407_l12.b1 MSMg01no407_l12.b1 CHROMAT_FILE:
MSMg01no407_l12.b1 PHD_FILE: MSMg01no407_l12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:26 2005
(545 letters)
>mm_chr11_5206467_5207411
Length = 945
Score = 1002 bits (518), Expect = 0.0
Identities = 536/542 (98%)
Strand = Plus / Plus
Query: 4 ggaattctatactatgcaaattaatttatacttggagaatcagtggtctagcagttggga 63
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 204 ggaattctatacaatgcaaattaatttatacttggagaatcagtggtctagcagctggga 263
Query: 64 aggaatgcatagaagaaggagatttcaaagggagaacatagggaacttttggtgtgccag 123
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 264 aggaatgcatagaagaaggagatttcaaagggagaacgtagggaacttttggtgtgccag 323
Query: 124 gttatggttttgtaggtgtgtgtacaggtcagatttcagaggacaacatgcaggaatctg 183
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 324 gttatggttttgtaggtgtgtgtataggtcagatttcagaggacaacatgcaggaatctg 383
Query: 184 ttctctccttccaccatgtgtaccctgagaattcaacagaaggcatcaggcttgacagtg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttctctccttccaccatgtgtaccctgagaattcaacagaaggcatcaggcttgacagtg 443
Query: 244 agcacttttacatgctaagccatcttgctggcccttaaagtttgttctagatgaaatggg 303
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 444 agcacttttacatgctaagccatcttgctggcccctaaagtttgttctagatgaaatggg 503
Query: 304 tggacaacccaaaattagcctttcccattactgcttaagagcaaaactattctgaaactg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tggacaacccaaaattagcctttcccattactgcttaagagcaaaactattctgaaactg 563
Query: 364 atgacatttgaccatgtgaatgctgttcttaaaaagacttatttacatttagtatatatt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 atgacatttgaccatgtgaatgctgttcttaaaaagacttatttacatttagtatatatt 623
Query: 424 tgtctgtatgtgcatgtatgtttggaaggatgccaatggagggcagaagaggatgttgaa 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tgtctgtatgtgcatgtatgtttggaaggatgccaatggagggcagaagaggatgttgaa 683
Query: 484 ctgttggaaacgctggtcccctccaagagcagcgacgtccttatctccggggctcgctct 543
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 684 ctgttggaaacgctggtcccctccaagagcagcgacgtccttatctccggtgctcgctct 743
Query: 544 ct 545
||
Sbjct: 744 ct 745
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 945
Length adjustment: 10
Effective length of query: 535
Effective length of database: 935
Effective search space: 500225
Effective search space used: 500225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no407_l12.g1 MSMg01no407_l12.g1 CHROMAT_FILE:
MSMg01no407_l12.g1 PHD_FILE: MSMg01no407_l12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:26 2005
(436 letters)
>mm_chr11_5430503_5431333
Length = 831
Score = 816 bits (422), Expect = 0.0
Identities = 431/436 (98%), Gaps = 5/436 (1%)
Strand = Plus / Minus
Query: 1 aactttttgccaaggaagcttatctcaagggaaatgcagttttttaataggcttatccag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 aactttttgccaaggaagcttatctcaagggaaatgcagttttttaataggcttatccag 572
Query: 61 gaaatgttacagtctctttaacgacagctatagatgctggatgtgttccgatgacttagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 gaaatgttacagtctctttaacgacagctatagatgctggatgtgttccgatgacttagg 512
Query: 121 tcatgtgtcacattgttgaagccattcattcttgagatgattctgtacaggagtgctcct 180
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 tca--tgtcacattgttgaagccattcattcttgagatgattctgtacaggagtgctcct 454
Query: 181 aatcgccactgcaccctaattgctgagtcatgtgctgagctacttgtagtggtcactgta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 aatcgccactgcaccctaattgctgagtcatgtgctgagctacttgtagtggtcactgta 394
Query: 241 cacgtggggctcgggagggaagagagcaggactttgagtctcttgtgaaggaatggaaca 300
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 393 cacgtggggctcgggagggaagagagcaggactt---gtctcttgtgaaggaatggaaca 337
Query: 301 agcaaagaaacttgtgttggtgtcaggttggtgtagctggatcacccaagtagtagccct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 agcaaagaaacttgtgttggtgtcaggttggtgtagctggatcacccaagtagtagccct 277
Query: 361 tgatctcctttcatgacggataggctcagttagtcaggaatgtttacacctcagttaact 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 tgatctcctttcatgacggataggctcagttagtcaggaatgtttacacctcagttaact 217
Query: 421 tcagtgattgacttaa 436
||||||||||||||||
Sbjct: 216 tcagtgattgacttaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 831
Length adjustment: 9
Effective length of query: 427
Effective length of database: 822
Effective search space: 350994
Effective search space used: 350994
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
