Query= MSMg01no408_b15.b1 MSMg01no408_b15.b1 CHROMAT_FILE:
MSMg01no408_b15.b1 PHD_FILE: MSMg01no408_b15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:58 2005
(568 letters)
>mm_chr11_79255883_79256849
Length = 967
Score = 1035 bits (535), Expect = 0.0
Identities = 557/565 (98%), Gaps = 3/565 (0%)
Strand = Plus / Minus
Query: 5 gaattctgtgactacactaaaaac-atcactaggttgaccaccttatgaaagataactct 63
|||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 650 gaattctgtgactatactaaaaacaatcattaggttgaccaccttatgaaagataactct 591
Query: 64 acagtatatgaattctatgctgatttaaacagtcaacacccacactcccaccctcaaaag 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 acagtatatgaattctatgctgatttaaacagtcaacacccacactcccaccctcaaaag 531
Query: 124 aaaaactttcatgactaaggctgtattatttcctcaaaacaacttttacttgctctaagt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 aaaaactttcatgactaaggctgtattatttcctcaaaacaacttttacttgctctaagt 471
Query: 184 gaccataacaagaaaaacagcaattggaggataaacagtttgtctcaaagacctgataat 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 gaccataacaagaaaaacagcaattggaggataaacagtttgtctcaaagacctgataat 411
Query: 244 gagagcagtatagtaatacaaattagttatacacaaaccagttaattcttaatttctagg 303
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 gaaagcagtatagtaatacaaattagttatacacaaaccagttaattcttaatttctagg 351
Query: 304 gtaatagagaattggtggtagttgctgaataaaatgattcacttgtgatgataatagtta 363
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 350 gtaatagagaattggtggtagttgctgaataaaatgattcact--tgatgataatagtta 293
Query: 364 aataaaatgtccaaagtttaaaattgcactcaaccttaaagtgggctcgattatgtgctc 423
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 292 aataaaatgtccaaagtttaaaattgcactcaaccttaaagtgcgctcgattatgtgctc 233
Query: 424 agcagcccctttaattagagtatctaagaatacagcataatgagccagacagggaggcac 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 agcagcccctttaattagagtatctaagaatacagcataatgagccagacagggaggcac 173
Query: 484 acctctgtaaccccagctttggaaagttaaggcaggaggatcactgcaagggcaaggaca 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 acctctgtaaccccagctttggaaagttaaggcaggaggatcactgcaagggcaaggaca 113
Query: 544 gcctgttctatattttaagttctag 568
|||||||||||| ||||||||||||
Sbjct: 112 gcctgttctatactttaagttctag 88
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 967
Length adjustment: 10
Effective length of query: 558
Effective length of database: 957
Effective search space: 534006
Effective search space used: 534006
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no408_b15.g1 MSMg01no408_b15.g1 CHROMAT_FILE:
MSMg01no408_b15.g1 PHD_FILE: MSMg01no408_b15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:58 2005
(544 letters)
>mm_chr11_79101437_79102384
Length = 948
Score = 990 bits (512), Expect = 0.0
Identities = 538/548 (98%), Gaps = 4/548 (0%)
Strand = Plus / Plus
Query: 1 acagtttgggcccttggtttgaaaccaggaactgggacagacaggtctgctgtcattgag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acagtttgggcccttggtttgaaaccaggaactgggacagacaggtctgctgtcattgag 260
Query: 61 cactggtgtgagcagttctcactgggtgtaaacgttgacacccagaagtcacagcaagca 120
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 261 cactggtgtgagcagttctcactgggtgtaaatgttgacacccagaagtcacagcaagca 320
Query: 121 gcacacttgaggaaggctcaggtgttcaggtgatcactatactgcagggtcctcctctgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcacacttgaggaaggctcaggtgttcaggtgatcactatactgcagggtcctcctctgg 380
Query: 181 gccccaggggggtgacaggagactccagttaagtccagagagg--gc--gcttgctgtgt 236
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 381 gccccaggggggtgacaggagactccagttaagtccagagagggagctagcttgctgtgt 440
Query: 237 tcttaaggtctcaccttttcaaaaggcacccagcaccttaggcaggtcacttcccctccc 296
|||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 441 tcttaaggcctcaccttttcaaaaggcacccagcgccttaggcaggtcacttaccctccc 500
Query: 297 agaactcatttgtcacaccacacggtctaggagactccaggtctgaagaggccacaattt 356
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agagctcatttgtcacaccacacggtctaggagactccaggtctgaagaggccacaattt 560
Query: 357 tcccatcatttctgtgcttctctccatagtctcgttcacccttcagtttaatggagtgtg 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcccatcatttctgtgcttctctccatagtctcgttcacccttcagtttaatggagtgtg 620
Query: 417 ttgtttgtctttcctgtaataatgggactgtaattcagccaagaagtttgatgggctatt 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttgtttgtctttcctgtaataatgggactgtaattcagccaagaagtttgatgggctatt 680
Query: 477 aattttattataccatcagtcttgattcccaaacataggctcagatgggctctggcttta 536
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aattttattacaccatcagtcttgattcccaaacataggctcagatgggctctggcttta 740
Query: 537 aaagtcca 544
||||||||
Sbjct: 741 aaagtcca 748
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 948
Length adjustment: 10
Effective length of query: 534
Effective length of database: 938
Effective search space: 500892
Effective search space used: 500892
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
