BAC Information

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BAC

Clone NameMSMg01-409F10
Chromosome11 (Build37)
Map Location 32,738,161 - 32,738,366
singlet/doubletsinglet
Overlap genenone
Upstream geneCpeb4, 4930524B15Rik, Nsg2, LOC669207, Il9r, 3300001G02Rik, Rhbdf1, Mpg, Mare, Hba-x, Hba-a1, F830116E18Rik, Hbq1, Sh3pxd2b, Ubtd2, 1700007I06Rik, Stk10, Fbxw11, LOC666616, 1700008A04Rik
Downstream geneLOC666620, LOC670035, LOC432548, Fgf18, Npm1, LOC666646, Tlx3, Ranbp17, LOC666258, Anp32c, LOC669306, LOC666269, Gabrp, D130052B06Rik, Kcnip1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-409F10.T7 (MSMg01no409_f10.b1)MSMg01-409F10.TJ (MSMg01no409_f10.g1)
ACCAG506847AG506848
length844815
length of high quality
(start - end)
210 (46 - 255)360 (75 - 434)
definitionCHROMAT_FILE: MSMg01no409_f10.b1 PHD_FILE: MSMg01no409_f10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:25:40 2005CHROMAT_FILE: MSMg01no409_f10.g1 PHD_FILE: MSMg01no409_f10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:25:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAAGGTTCTTACAGCAAGAGGAACAGGCCATTCAAGGAGAAGCAT
GTGAGAGCCTAGCCAAGGGGAAGGGGTTGGGGCTCAGCCCTGGCGCTGGG
TGATGAAGCTGCATGCTTTCCACCATTTCTGCCAATCGCCGTCCCTCTCT
GAACCTGCACATGTGTGGCTGTGGGTAAAGAAGATGGACTAGAGCCCATG
CAAGATGGACCTGCAGACCCCATCCAGGAGCTACAAGTGTATGGCCTTCT
GAGGACATAGGAGAGAACTCTGTATTTTTCTTGTGAATGTGGCCAAGGGT
GGACGTCTGGCTTGTCCACTAGCCCCTTGAGGTTGATATGACTTCTTTTC
ATTATTAAATCTCTCACGCCCGTCATATTTCTGTACCCACTCTATTTGCC
CCACATTTATTTGTCCCTCATTGACTACCACCCCTCGGCTCTATAACGTT
TGTCACGTGTTATTCCTTGACTTATTATTGCTTTTTGTTATTTTTTCCCC
ATCTTTCAATTTTACTGCTTTCCTTTCCATTTTTTATTTGGTCCTTCCTC
CCATATATCTTTATTCTTTTATTCTCTCCCTATATTCATCTCTTCACTAT
TCTCTCTCTTCTTTCCTCTTATCCTTCACTCCATTCTCCATCAACCTTCC
AATCTATTTATTTTATATCTACTTTTATCTACCCCTATTCTTACTTCATC
TTCTTACCCACCTTTTTTCCTATTCTTTTGTTATCTCTTCATTCTCTTAT
CCTTTCTCCTCCCCTACATTATCCATTACTATTCCTCCACTCAN
CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTACAGCGTTAGGTTTATACCTATAGG
TTTGTGCCAGTCTCAGGCCTGACAAACAGAAGCTTCTTTTTTGCTATGGG
TTAATTAAGAGTCTAAACCTAGTCATAGTGCTGGCAACAAATGGATGAAT
GCTCTGGTGGGTCATCTCTATCAACTTCCTGAAATCCAAGGCCCAGAGAC
TTCATGGAAGACAGCAAGGGAAGAATGTAAGAGTTGGCAGATGGGGAGAG
CAGTGGAATGCTGGTCTCTGGACATGGCATACACAGTTACAACATGGCCG
TAATACATGCACGTTCATGGCGCAAGACCTGCACCATGTCAAGTCAATCA
AAATCCCAGCATGAATGGATCCTCCCTTATTGGTAGTTGATGGTTACTGA
GACTTGATGTGTTTATGCCTTATCTCCATCCTCTTTTTTCTTATCTCTTT
CTCTCTTAACTCTATATCTCTTAAATATTCTTTTTCCTCTCTCCACTTCC
CTCCCTTTTTCCCTTATCATTTTTTCTTCTTCTTGACTTTTCCTTCTCTT
CATCTTCCTCTACTACTCATCGTTTATCACATCTTCATTTCCATTTTTTT
CTCCACTCTTTTTTTTTTATATTTTTTTTCCTTTATATACCATTCTTATT
AATTCCCATCCTTATATTTTTTATATCCTTACTTCCTTTTCCACCCTTTT
TTATTCATTATATCCTTTCTCTTCTTTCATTTTCCTCTTTCCTTCCTATC
CTTTCTTTTCACTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no409_f10.b1 MSMg01no409_f10.b1 CHROMAT_FILE:
MSMg01no409_f10.b1 PHD_FILE: MSMg01no409_f10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:40 2005
         (210 letters)



>mm_chr11_32737957_32738566
          Length = 610

 Score =  360 bits (186), Expect = e-104
 Identities = 201/206 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaaggttcttacagcaagaggaacaggccattcaaggagaagcatgtgagagcc 64
           ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaaggttctcaaagcaagaggaacaggccattcaaggagaagcatgtgagagcc 264

                                                                       
Query: 65  tagccaaggggaaggggttggggctcagccctggcgctgggtgatgaagctgcatgcttt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tagccaaggggaaggggttggggctcagccctggcgctgggtgatgaagctgcatgcttt 324

                                                                       
Query: 125 ccaccatttctgccaatcgccgtccctctctgaacctgcacatgtgtggctgtgggtaaa 184
           ||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct: 325 ccaccatttctaccaatcgcagtccctctctgaacctgcacatgcgtggctgtgggtaaa 384

                                     
Query: 185 gaagatggactagagcccatgcaaga 210
           ||||||||||||||||||||||||||
Sbjct: 385 gaagatggactagagcccatgcaaga 410


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 210
Length of database: 610
Length adjustment: 9
Effective length of query: 201
Effective length of database: 601
Effective search space:   120801
Effective search space used:   120801
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)