Query= MSMg01no409_h22.b1 MSMg01no409_h22.b1 CHROMAT_FILE:
MSMg01no409_h22.b1 PHD_FILE: MSMg01no409_h22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:52 2005
(368 letters)
>mm_chr11_115736598_115737365
Length = 768
Score = 638 bits (330), Expect = 0.0
Identities = 360/382 (94%), Gaps = 19/382 (4%)
Strand = Plus / Plus
Query: 5 gaattctccatgtgttccggatatctggccaccattaagcgtgtgacttggaggttttct 64
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 gaattctccatgtgttctggatatctggccaccattaagcgtgtgacttggaggttttct 245
Query: 65 attctgagcattgtcttcttagctcctttgtaccatcctctgatgcgtgaaagttctgga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 246 attctgagcattgtcttcttagctcctttgtaccatcctctgatgcgtgaaagttctaga 305
Query: 125 cagactgctgggttgtttgatcaatggattgaattttcatgctggggaggactctgcaag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 cagactgctgggttgtttgatcaatggattgaattttcatgctggggaggactctgcaag 365
Query: 185 tgagctgtgacatacttccaatcctgatggatgtgtgtgtgtgtgtgtgtgtgt------ 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 tgagctgtgacatacttccaatcctgatggatgtgtgtgtgtgtgtgtgtgtgtgtgtgt 425
Query: 239 -------------acatgttcatgtatgtgtgcatatgtgaatgtggaaatgtgcctgct 285
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 ggtctctgtgtgtacatgttcatgtatgtgtgcatatgtgaatgtggaaatgtgcctgct 485
Query: 286 ggtgtggactcaagtgtgcacatgagtgtggagatcagagatctctcttccctggttgtt 345
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 486 ggtgtggactcaagtgtgcacatgagtgtggagatcagagttctctcttccctggttgtt 545
Query: 346 tgttctcaatctttgtttgttt 367
||||||||||||||||||||||
Sbjct: 546 tgttctcaatctttgtttgttt 567
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 768
Length adjustment: 9
Effective length of query: 359
Effective length of database: 759
Effective search space: 272481
Effective search space used: 272481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no409_h22.g1 MSMg01no409_h22.g1 CHROMAT_FILE:
MSMg01no409_h22.g1 PHD_FILE: MSMg01no409_h22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:52 2005
(372 letters)
>mm_chr11_115931343_115932114
Length = 772
Score = 642 bits (332), Expect = 0.0
Identities = 358/372 (96%), Gaps = 10/372 (2%)
Strand = Plus / Minus
Query: 1 caggacagccagggatatgtagggacaccctgtcttaaaaaataacaaacaaacaaacaa 60
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 693 caggacagccagggatatgtagggacaccctgtcttaaaaaat----aacaaacaaacaa 638
Query: 61 aaacagtcaggcgacttgaaaagcacctgcagaaactgagaccccgtgagtctccctggc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 aaacagtcaggcgacttgaaaagcacctgcagaaactgagaccccgtgagtctccctggc 578
Query: 121 ctccagcctcgaccggttgagaagggagatgttcccactgagatgtgacgtcctgtctct 180
||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 577 ctcca------accggtcgagtagggagatgttcccactgagatgtgacgtcctgtctct 524
Query: 181 gcaggcagtggttggcctacagccgcctctaccagagcctggagttccccagcggctgcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 523 gcaggcagtggttggcctacagccgcctctaccagagcctggagttccccagcagctgcc 464
Query: 241 tcctgcaccccatcaccagcatagagtaccagtggatccagggccgactcaaagcagaac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 tcctgcaccccatcaccagcatagagtaccagtggatccagggccgactcaaagcagaac 404
Query: 301 aggtgactggtgtgactcgcataggtggggctctggagagacgtggcctgtaacatcttc 360
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 aggtgactggtgtgagtcgcataggtggggctctggagagacgtggcctgtaacatcttc 344
Query: 361 ctggctttgcag 372
||||||||||||
Sbjct: 343 ctggctttgcag 332
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 772
Length adjustment: 9
Effective length of query: 363
Effective length of database: 763
Effective search space: 276969
Effective search space used: 276969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
