Query= MSMg01no409_k13.b1 MSMg01no409_k13.b1 CHROMAT_FILE:
MSMg01no409_k13.b1 PHD_FILE: MSMg01no409_k13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:26:06 2005
(509 letters)
>mm_chr11_52517522_52518430
Length = 909
Score = 922 bits (477), Expect = 0.0
Identities = 501/509 (98%)
Strand = Plus / Plus
Query: 1 agtgggtcaggtagaaggtagccatgcagtgtggtgggagctaagcccaagaccagacag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtgggtcaggtagaaggtagccatgcagtgtggtgggagctaagcccaagaccagacag 260
Query: 61 ggtcctgggagattcccgatgagcagagagcgctcatgctcttccctgggaggttgcact 120
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtcctgggagattcctgatgagcagagagcgctcatgctcttccctgggaggttgcact 320
Query: 121 cttatttctgcccataaaagggtttcatggcatcaagaccattttaggggctagagagat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttatttctgcccataaaagggtttcatggcatcaagaccattttaggggctagagagat 380
Query: 181 ggcacagcaattacaagcagttgttggtcttccagaggacgtaggtttggttcccagcac 240
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 381 ggcacagcaattacaagcagttgttggtcttccagaggacataggtttggttcccagcac 440
Query: 241 ccatgtggagtttttcgcaaccatctgcatctccagctctagaggatccaactcctcctg 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccatgtggagtggctcgcaaccatctgcatctccagctctagaggatccaactcctcctg 500
Query: 301 ctttctgtgggaacctctactcacatggcatgaattggcacagacacacattagtgcccc 360
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 501 ctttctgtgggaacctctactcacatggcatgaattggcacagtcacacattagtgcccc 560
Query: 361 ataatcacaacacaataaccattctgaaatgtatcattagtcccgtttcctctagacaca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ataatcacaacacaataaccattctgaaatgtatcattagtcccgtttcctctagacaca 620
Query: 421 gggagttatgaatgggaccatcctgcacacagggtgtgaacgggactatgaggctgtacc 480
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 621 gggagttatgaatgggaccatcctgcacacaggatgtgaacgggactaagaggctgtacc 680
Query: 481 tagtgggaagatcttccactttataccaa 509
|||||||||||||||||||||||||||||
Sbjct: 681 tagtgggaagatcttccactttataccaa 709
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space: 448601
Effective search space used: 448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no409_k13.g1 MSMg01no409_k13.g1 CHROMAT_FILE:
MSMg01no409_k13.g1 PHD_FILE: MSMg01no409_k13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:26:06 2005
(245 letters)
>mm_chr11_52691719_52692366
Length = 648
Score = 455 bits (235), Expect = e-132
Identities = 243/247 (98%), Gaps = 3/247 (1%)
Strand = Plus / Minus
Query: 1 ttaaaagagaggacacattccctacacacattgcccacagctgcctggc---tttttttt 57
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 447 ttaaaagagaggacacattccctacacacattgcccacagctgcctggcttttttttttt 388
Query: 58 tttttttttaccagtagatgagaaacagcaactctaccatctctgtgataaattaaggct 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tttttttttaccagtagatgagaaacagcaactctaccatctctgtgataaattaaggct 328
Query: 118 cctactagcagacggagcaacggaaggttgtttgtaacattaatactcccggggcctgaa 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 cctactagcagacggagcaacggaaggttgtttgtaacattaatactcccggggcctgaa 268
Query: 178 atctcggcatcggggctgcatatcaacgtctggcagaaacaaatcagttgcaagataaaa 237
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 atcacggcatcggggctgcatatcaacgtctggcagaaacaaatcagttgcaagataaaa 208
Query: 238 tccaata 244
|||||||
Sbjct: 207 tccaata 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 648
Length adjustment: 9
Effective length of query: 236
Effective length of database: 639
Effective search space: 150804
Effective search space used: 150804
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
