CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAATCCGCGGA
ATTCCAGACCCTTTAGCACATCAAAAATAATGGCATGGATGAATTTTTAA
AATAATATTAATAAAGGCCTGAATGAAGTCCAAGAGAACAGAAACAACCA
GAAGAATGAAATTAGAACGTCAATGTTGACTAAAAAAATAGTATTCAGAT
GGTAATGAATGAAAATCTCAAAAAGCTATCAAAAAATATTCCTAAGACAT
TTGCTAAAACAATGACCAATAAGAAATGCTTAACACTACAAAATCAACAA
AATGACAGGAATTGATATATATCTTTCTTTTTTTAATTTTTTTATTGGGT
ATTTTCCTCATTTACATTTCCAATGCTATCCCAAACGTCCCCCATACCCT
CCCCACCTACTCCCACTTCTTGGCCCTGGCGTTCCCCTGTACTGAGGCAT
ATAAAGTTTGCATGACCAATGGGCCTCTCTTTCCACTGATGGCCGGCTAG
GCCAACTTTTGATACATATGCAGTTAGAGACACGAGCTCCAGGGGGTACT
GGTTAGTTCATAATGTTGTTCCACCTATAGGGTTGCAGATCACTTTAGCT
CCTTGGGTACTTTCTCTAGCTCCTCCATTGGGGGCTCTGATCCATCCAAT
AGTTGATTTTGAGCTTCCTCTTTTGTGTTTTGTTAGTGCCTGGAATTACC
TTCCAAGAGACAACTATTTTGTGGTCTTTTCAATAAACCTTGCTAATGTA
TGTAATGTGGTCTCTCATTTGGCGGATTA

CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAAGCTCAGGGTCGGGTCGCTACA
AGGATTTTTTGTTTTGTTTTGTTTTTTTCCGGGACAGGGTTTCTCTTTAT
AGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACT
CAGAAATCCGCCTACCTCTGCCTCCCAAGTGCTGGGATTACAGGAGTGCG
CCACCACGCCCGAAGGATTTTCTAGGAACCATCGGAACACTGGTGGAGGC
TTAGCTATATGTCAAAAATCAATCCTTTTTTGTTCTTATAATAAAACAAT
ACTGAATGAGAGCACATGGATCCAAACACTAGACTAATGCAGGGACAGGC
TTTGAGTATATGGGCTATGGTAATGCCAAGGTTCGAGGAGGTAACGTTTC
CTTCTGATTCCCTCCCTGCTCAGGACTGCGTCCATGGCTTTTCAGGCCTA
CTGGAGCGGTTTGTGCACATTCTCTAGTGTGATCTCTCGTCTTTCTTATT
CTTTGTGTACGGTTCTCTCTATGATTGTCCTTGCATATTGTCACGCTATT
GTTTCTCCGCTTTTTCCATTTTTTTTTGTTCCCCTTTACATTTATGTACC
ACTGTATATTTATCTATTCCCCTTTATTTTTTGCTAATCCCACTCTATTT
TTTGATTCGTTGCTCTTTCCACTTCTTTCCTCTTTTCCTCCTCTTCCAAC
CATTCTCCTTCTTCACTTTTTCCGCTT

Query= MSMg01no409_m10.b1 MSMg01no409_m10.b1 CHROMAT_FILE:
MSMg01no409_m10.b1 PHD_FILE: MSMg01no409_m10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:26:15 2005
         (522 letters)



>mm_chr11_9560098_9561019
          Length = 922

 Score =  994 bits (514), Expect = 0.0
 Identities = 520/522 (99%), Gaps = 1/522 (0%)
 Strand = Plus / Minus

                                                                       
Query: 2   ggaattccagaccctt-tagcacatcaaaaataatggcatggatgaatttttaaaataat 60
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 ggaattccagacccttcaagcacatcaaaaataatggcatggatgaatttttaaaataat 489

                                                                       
Query: 61  attaataaaggcctgaatgaagtccaagagaacagaaacaaccagaagaatgaaattaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 attaataaaggcctgaatgaagtccaagagaacagaaacaaccagaagaatgaaattaga 429

                                                                       
Query: 121 acgtcaatgttgactaaaaaaatagtattcagatggtaatgaatgaaaatctcaaaaagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 acgtcaatgttgactaaaaaaatagtattcagatggtaatgaatgaaaatctcaaaaagc 369

                                                                       
Query: 181 tatcaaaaaatattcctaagacatttgctaaaacaatgaccaataagaaatgcttaacac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 tatcaaaaaatattcctaagacatttgctaaaacaatgaccaataagaaatgcttaacac 309

                                                                       
Query: 241 tacaaaatcaacaaaatgacaggaattgatatatatctttctttttttaatttttttatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 tacaaaatcaacaaaatgacaggaattgatatatatctttctttttttaatttttttatt 249

                                                                       
Query: 301 gggtattttcctcatttacatttccaatgctatcccaaacgtcccccataccctccccac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 gggtattttcctcatttacatttccaatgctatcccaaacgtcccccataccctccccac 189

                                                                       
Query: 361 ctactcccacttcttggccctggcgttcccctgtactgaggcatataaagtttgcatgac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ctactcccacttcttggccctggcgttcccctgtactgaggcatataaagtttgcatgac 129

                                                                       
Query: 421 caatgggcctctctttccactgatggccggctaggccaacttttgatacatatgcagtta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 caatgggcctctctttccactgatggccggctaggccaacttttgatacatatgcagtta 69

                                                     
Query: 481 gagacacgagctccagggggtactggttagttcataatgttg 522
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  gagacacgagctccagggggtactggttagttcataatgttg 27


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 922
Length adjustment: 10
Effective length of query: 512
Effective length of database: 912
Effective search space:   466944
Effective search space used:   466944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)