BAC Information

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BAC

Clone NameMSMg01-409N07
Chromosome11 (Build37)
Map Location 88,064,044 - 88,251,200
singlet/doubletdoublet
Overlap gene1700106J16Rik, LOC668793, Msi2
Upstream genePpm1e, Rad51c, Tex14, Sept4, Mtmr4, Hsf5, Rnf43, Supt4h1, Bzrap1, Mpo, Lpo, Mks1, Epx, Olfr462, Olfr463, Olfr464, Dynll2, Sfrs1, Vezf1, Cuedc1, Mrps23
Downstream geneLOC100038945, Akap1, Scpep1, OTTMUSG00000001305, 2210409E12Rik, Coil, LOC100039051, Trim25, Dgke, A930013B10Rik, Gm525, LOC100039114, Nog, LOC100039047
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-409N07.T7 (MSMg01no409_n07.b1)MSMg01-409N07.TJ (MSMg01no409_n07.g1)
ACCAG507222AG507223
length809815
length of high quality
(start - end)		351 (70 - 420)382 (71 - 452)
definitionCHROMAT_FILE: MSMg01no409_n07.b1 PHD_FILE: MSMg01no409_n07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:26:20 2005CHROMAT_FILE: MSMg01no409_n07.g1 PHD_FILE: MSMg01no409_n07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:26:20 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,250,877 - 88,251,200)(88,064,044 - 88,064,422)
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGCTGTGATTCCCGCAGACTAAAATCTCGGCCCATGATTTTAACA
GCGTTGACCCTGTGGAGGACCTGTGAATTACTCTGAGGTGGGGCAGCCCA
GGATTGTGAGATTAGAGTTTGCCTGTGCACACACACTCTAGACCAGTGGT
TCATAACCTTCCTAATGCTGCAACCCTTTAAAACACAGTTCCTTATGTTG
TGGTGATACCCAACCATTAAATTATTTCCACTGGGGGGCTGGAAATGGTT
CAGCGGTTAAGAGCACTGACTGTTCTTTCTGAGGTCCTGAGTTCAATTCC
AAGCAACCACATGATGGCTCACAACCATCTGTAACTGGGTCTGATGCCCT
CTTCAGGTGTGTCTGAAGAGAGCAGTGGTGTACTCTTATACGTAACATAA
ATAAATACATCTTTTTTTTTTAATTATTTTCCTTGCCACCTTAGAGCTTT
GTTTGCTTGTATGTCTTGTCCTGCTTTGTCTTCTCCCACTTATTTCTCTT
TTTTTCCCTATCCTCCCCTTCTATTCATTCACAAAACTTTCCTGCTCCAT
TCTTTTATTTATTTCTCTTTGTCTTTTTATTTTCCTCCTTTTCCTTTTTT
ATCCCTCTCACTTTCTTTACCTTAATCCTTTTACTTTCTCTCGTCACTTC
CCATTTATACACTTCATCTTTCTTTCCCCTTTTTCATCCCCTTTAATCCC
TCTACTACTCTCCCAATCTTTTCCCTTTTTTTACACTTTCTTTCTTTTTC
TCTCACCTN

TTGCAGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAGAGCCTGGGGTCGTAACATTCAGGAAAGA
AAGGAAAAAAGAACAGAGCCCCATATGACAGAATCATGCTGCTAGCTAGG
TACATTCCAGCAAAGAAGCCTGGCAGACATGAGCAAGGGTGATGACATCA
GAGAAGACACCAAGGGTGTGATCATGGATGGCTCTGTTGAGTGGAAGAAC
TGTACATTCCAAACATGGAATCTTTGGAAAGTCCACTGGCATGTGGAAAT
ACCAGCAGAGGATTGTGGGTATAAGCTGGGCGAGCAGCCAGGAGATAGTG
GTGGTATGGACTATGTAGAATAGTGGAACAAGAAGCAGGAAGAGTCTAGA
CACATCTGAAAGGTAAAACGGACTAGATCTGCTGATGTTCCGGTTGAGGT
TGTGAAAGATAGAGACAGTTTGATTTTTACCGCTTGATTGGCGTTTATTT
TTTCCCACTTTGCCCTATTGTTCCCACTTTTACTCCCCCATTTCATTTAT
TATTCCATCTTTTGTTTCCCCTCTTCTATCTCTTCTTCCCTTCTCATTCT
CTTAATATTAACTTACCTTCTCTTCCTTCTCGTCTTCACTTTATCTATTG
CTTCATCATTTCTGCTTTCGTCTCTACATTCTCTTTCACTCCCTTTATCT
ATCTCATCAACTTCTTTTTCTCTCCACTTTTCATTACCTCTCTTCTACTT
ACTTTAATTCTTTCCTTTTTTTTCCCTCCTTTTTACTCTCTATTTTTTTC
TTCCTTTTTATACCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no409_n07.b1 MSMg01no409_n07.b1 CHROMAT_FILE:
MSMg01no409_n07.b1 PHD_FILE: MSMg01no409_n07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:26:20 2005
         (351 letters)



>mm_chr11_88250877_88251627
          Length = 751

 Score =  619 bits (320), Expect = 0.0
 Identities = 323/324 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagactaaaatctcggcccatgattttaacagcgttgaccctgtggaggacctgtgaatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cagactaaaatctcggcccatgattttaacagcgttgaccctgtggaggacctgtgaatt 265

                                                                       
Query: 61  actctgaggtggggcagcccaggattgtgagattagagtttgcctgtgcacacacactct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 actctgaggtggggcagcccaggattgtgagattagagtttgcctgtgcacacacactct 205

                                                                       
Query: 121 agaccagtggttcataaccttcctaatgctgcaaccctttaaaacacagttccttatgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 agaccagtggttcataaccttcctaatgctgcaaccctttaaaacacagttccttatgtt 145

                                                                       
Query: 181 gtggtgatacccaaccattaaattatttccactggggggctggaaatggttcagcggtta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 gtggtgatacccaaccattaaattatttccactggggggctggaaatggttcagcggtta 85

                                                                       
Query: 241 agagcactgactgttctttctgaggtcctgagttcaattccaagcaaccacatgatggct 300
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 84  agagcactgactgttctttcagaggtcctgagttcaattccaagcaaccacatgatggct 25

                                   
Query: 301 cacaaccatctgtaactgggtctg 324
           ||||||||||||||||||||||||
Sbjct: 24  cacaaccatctgtaactgggtctg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 351
Length of database: 751
Length adjustment: 9
Effective length of query: 342
Effective length of database: 742
Effective search space:   253764
Effective search space used:   253764
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no409_n07.g1 MSMg01no409_n07.g1 CHROMAT_FILE:
MSMg01no409_n07.g1 PHD_FILE: MSMg01no409_n07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:26:20 2005
         (382 letters)



>mm_chr11_88063844_88064625
          Length = 782

 Score =  725 bits (375), Expect = 0.0
 Identities = 378/379 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agagcctggggtcgtaacattcaggaaagaaaggaaaaaagaacagagccccatatgaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agagcctggggtcgtaacattcaggaaagaaaggaaaaaagaacagagccccatatgaca 260

                                                                       
Query: 61  gaatcatgctgctagctaggtacattccagcaaagaagcctggcagacatgagcaagggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaatcatgctgctagctaggtacattccagcaaagaagcctggcagacatgagcaagggt 320

                                                                       
Query: 121 gatgacatcagagaagacaccaagggtgtgatcatggatggctctgttgagtggaagaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatgacatcagagaagacaccaagggtgtgatcatggatggctctgttgagtggaagaac 380

                                                                       
Query: 181 tgtacattccaaacatggaatctttggaaagtccactggcatgtggaaataccagcagag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtacattccaaacatggaatctttggaaagtccactggcatgtggaaataccagcagag 440

                                                                       
Query: 241 gattgtgggtataagctgggcgagcagccaggagatagtggtggtatggactatgtagaa 300
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gattgtgggtagaagctgggcgagcagccaggagatagtggtggtatggactatgtagaa 500

                                                                       
Query: 301 tagtggaacaagaagcaggaagagtctagacacatctgaaaggtaaaacggactagatct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tagtggaacaagaagcaggaagagtctagacacatctgaaaggtaaaacggactagatct 560

                              
Query: 361 gctgatgttccggttgagg 379
           |||||||||||||||||||
Sbjct: 561 gctgatgttccggttgagg 579


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 782
Length adjustment: 9
Effective length of query: 373
Effective length of database: 773
Effective search space:   288329
Effective search space used:   288329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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