BAC Information

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BAC

Clone NameMSMg01-410C11
Chromosome11 (Build37)
Map Location 44,525,952 - 44,526,192
singlet/doubletsinglet
Overlap geneEbf1
Upstream geneTtc1, Adra1b, Il12b, Ublcp1, 3732413I11Rik
Downstream geneLOC382510
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-410C11.T7 (MSMg01no410_c11.b1)MSMg01-410C11.TJ (MSMg01no410_c11.g1)
ACCAG507468AG507469
length769816
length of high quality
(start - end)
---241 (75 - 315)
definitionCHROMAT_FILE: MSMg01no410_c11.b1 PHD_FILE: MSMg01no410_c11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:26:48 2005CHROMAT_FILE: MSMg01no410_c11.g1 PHD_FILE: MSMg01no410_c11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:26:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCACTCATAATTGCCGGCGCTATACGACNCCTATTTCACACGGACCGNGG
NAANCNNNATTTCCCGAAACAAGGCCCANANNTTCCTGCCTTCGCCAGTA
GTGAAACTTTGAGAGTAAAAGCCAAGGAAAGCTGTCGCTAGCATAGGCAG
CTTCCTATTGCAACCATCAGCCAGTGCGGATTTTTACCTAGGAGGCTACT
TACAGAAGAGACTCATGAAACCACTGCTCTGTGATGTGACAGGTGTTTTG
GCTATTCCAAGGTGGCCTAAGGGATCCAAACAAAAGTGGTTATAAGGAGT
TATGAACAGAATCTTTCTATTTATTTAAACCCTGCTATGAAGCTAGTAGG
TGACAGTTATTGATACCCATCAATTTGACAAAATTAGTCACATGGGACCA
TGGCTCCTGAGGACATTCCCTTGATTAGTGTGATGCCTTTCCCTGGACAG
GTCATCCTGCTCTGCTCACGAGTGAGGAACATGAGGCACTGATCAGTGAC
ATGCTTGCATTCACATCGCTCCCTGCTTCTACACTCTGCCTATCGTGAAC
CGTTGTCCCACGTCCCCCGATGCCCTATCCTGCCCCTCTTATTGACCGTG
TATTTCATCATGTGCTCTGCATTTACCCCTCATTCCCTCCCCCTTTCTTG
TCTCTCTTCTTCTCTCCCCTTTCTTCCCTTCATTTTTCGGCTTCTTATCC
CGCCTCCCCGTCCTTCTCTTTCCCGCCTGATCTCCTCTCCTTCTCTTTAT
CCCCTTTATTTTTCTTTTN
TTACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGTTTCTAAGAACTCTTGCTATTTAC
ATACGCTCTACTTCTCAAAAGAGTGTCACCTTACTATTACTGCGATGCTT
AACAAAGGCAATGTCAGAAATGAGTCGCTGGTGGGGGGCTTTGTTTCTCA
AGTGCCATGTTTTGATTGGGATCTGTGTTAATTCACGTGCCCTCCTTGTG
AGACAACTAGAAATTATCATTGTCAATACAGTTTCCTAACAATCTCAGAA
TTCAGGCAATTAGGTACTATATTAGTCATTGTCAGCAAAATAAAGAATGT
CGTCTTCTAATGGCTCAGAAGAATAAAAGAGCTGGAAAAGGGAGGAAAGG
AGAGGGAGGGAGGTAGAGAGATAGATATATCTATCCCTTTTTTCTTACTC
CCCTCTCTCCTTTCCCTTCTTCTCTCCTCCTCATCCTCTTTTCTCTTCCC
TTCTCCCCTTCCTTCCTTTTTTTTCCCTTTTTTCTTCACTCCCTCCTCCC
CTTTTCTTCTTCCTTTCTTTTCTTCTTTTCCCTTCACTCCCTTTTCTCTC
TTACTTCTCTTTCCCCCTTTCTTCCTTTCCTTTATCCATTCTACCTCCCT
ACCCCATTCATCCTTTCCCCCTTTCCTTCTTTCTTTTCTCTTCCCCCTTT
TCACCCTTTCCTCCTCTCATTCTCCTTTACTTTTTCTTTTCTTTTCCCCC
CTCCTCTTCTCTTCTCTTTCTTCCTATTTCCCTTTTACTTCCTTTTTTCT
CCACTTCCCCTTCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no410_c11.g1 MSMg01no410_c11.g1 CHROMAT_FILE:
MSMg01no410_c11.g1 PHD_FILE: MSMg01no410_c11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:26:48 2005
         (241 letters)



>mm_chr11_44525752_44526392
          Length = 641

 Score =  451 bits (233), Expect = e-131
 Identities = 239/241 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtttctaagaactcttgctatttacatacgctctacttctcaaaagagtgtcaccttac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtttctaagaactcttgctatttacatacgctctacttctcaaaagagtgtcaccttac 382

                                                                       
Query: 61  tattactgcgatgcttaacaaaggcaatgtcagaaatgagtcgctggtggggggctttgt 120
           ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 381 tattaatgcgatgcttaacaaaggcaatgtcagaaatgagtcgctggttgggggctttgt 322

                                                                       
Query: 121 ttctcaagtgccatgttttgattgggatctgtgttaattcacgtgccctccttgtgagac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttctcaagtgccatgttttgattgggatctgtgttaattcacgtgccctccttgtgagac 262

                                                                       
Query: 181 aactagaaattatcattgtcaatacagtttcctaacaatctcagaattcaggcaattagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aactagaaattatcattgtcaatacagtttcctaacaatctcagaattcaggcaattagg 202

            
Query: 241 t 241
           |
Sbjct: 201 t 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)