BAC Information

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BAC

Clone NameMSMg01-410H14
Chromosome11 (Build37)
Map Location 47,681,402 - 47,868,646
singlet/doubletdoublet
Overlap genenone
Upstream geneSgcd, LOC628753, LOC100039647
Downstream geneLOC192895, Hn1l-ps2, LOC667163, LOC432554, Gnb2l1, Trim41, LOC100039945, Trim7, Irgm, EG432555, OTTMUSG00000005523, Psme2b-ps, LOC667214, Tgtp, LOC667219, 9930111J21Rik, Olfr56
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-410H14.T7 (MSMg01no410_h14.b1)MSMg01-410H14.TJ (MSMg01no410_h14.g1)
ACCAG507714AG507715
length733735
length of high quality
(start - end)		245 (76 - 320)428 (83 - 510)
definitionCHROMAT_FILE: MSMg01no410_h14.b1 PHD_FILE: MSMg01no410_h14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:27:13 2005CHROMAT_FILE: MSMg01no410_h14.g1 PHD_FILE: MSMg01no410_h14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:27:13 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,681,402 - 47,681,645)(47,868,219 - 47,868,646)
sequence
GGTACTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXATTCAAAGAGAGC
GCGGAATTCAAACGATCGCAATATATACCTCAGGATGGCCTGATTTAAAA
ATCCATAAAATTAAAATGGTAGCAAGTACATAAATGGTTTCCTGAGTATT
TAATGTTAGCAGTTATTTCCATGAGGAAAAGAAATGTATGTCCTTGTGGC
TATAATTTGTTGGATTCTCAAAGCTAGTAAGTTATTCATGGTTTCAGCAT
CATCTTATGTTCATGTGCATGGCAATCACCTGTGGAACCTTATTCAATTA
ATACTGAACAAAGATACTGTTTGCTCNTTTATGGCCCTCTGAGTTACTGA
TGCTTACTGCCCACTGATGTCTTCTAACAGAGCCAAAGACTCTCCTCTCA
TCAGAAGCTATGTTGCTTTTGCTTTGCTTTCTCTATGGAAACTTGCACCC
AGAGTTTGGTGTCATGCTACTCTATCACTGAGCTATAACCCCTACATTAC
TATATCTCTGCATCTTCACACTGACTGTATTTGTTCCAAATACAGCTTAT
GCCAGTTCTACTCACTATTTTTGACGTACATCCTTCACTAAATATATTTC
ATATTCCATTTTGACCGTTCTCCCTTCATAGTTGATTCTCCTAATACTCC
CGTTCTCTTCTTCCTACTCTCTCCCTCACCATGATCCCGTTTACTTTTTT
TCCTCGCCTCTGTCTTTTTCTACTCATTTACAC

NTTTTTTCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGGTCCTCCTGTTTCTA
CTTCTTAACTCCCAGGACTACACGCACATGCCCACAAACTGGCTTTTAGG
TCTTATGTTCTTATGACTGACATCAATAGCCCAGAACAGCTTCTATGTAA
GTGCCTATAGTCACTAAAGATCTATAAGTGACAGAGCTTGGTCCCTGATT
GAGCATGTCTGATCCCTTAAGGTAATAGAGGAGCTTTGTCTGAATCTTCT
AATCTTTGTCAACTGCCTTGGAGGTCTGCCGTCCCAGTCTTTCTCAGCTG
GCAAATTCCCCTGCACCTGTAAGCTACCTGCTATAGCATTGCTCCAGGAA
ACAGCAGAGTGGGTCAATTCCTGAGCTCTTCTATCTCCTAATCAACTCTA
ATAGCCCTGTCTACTTGCCACTTGAGGATGGTGTTAAATAGAACTTCCTG
GTGAGTATGCCTGGCATTGTTTATAAACACATCTGTGATGTCCAGGCTAG
GAAGAGGAAACTAACTGCTAAGGAATAAGAAGCACTAGATGTGGGCCTTG
CCACTCTCCTGTTGACTCTCTGACCCCCGAATCCCCAATTTAAAAAACTC
TTTTTTTTTGAACCTCTTTTCACTTCTACTTTTCCTACATAATCCGCTCG
TCTTTCTTTGGCCTTGCCTTCTTCCCCTCTTTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no410_h14.b1 MSMg01no410_h14.b1 CHROMAT_FILE:
MSMg01no410_h14.b1 PHD_FILE: MSMg01no410_h14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:13 2005
         (245 letters)



>mm_chr11_47681202_47681846
          Length = 645

 Score =  433 bits (224), Expect = e-126
 Identities = 239/244 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tacctcaggatggcctgatttaaaaatccataaaattaaaatggtagcaagtacataaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tacctcaggatggcctgatttaaaaatccataaaattaaaatggtagcaagtacataaat 260

                                                                       
Query: 61  ggtttcctgagtatttaatgttagcagttatttccatgaggaaaagaaatgtatgtcctt 120
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 ggtttcctgagtatttaatgttagcagttatttccatgagggaaagaaatgtatgtcctt 320

                                                                       
Query: 121 gtggctataatttgttggattctcaaagctagtaagttattcatggtttcagcatcatct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 321 gtggctataatttgttggattctcaaagctagtaagttattcatggtttcagcatcatca 380

                                                                       
Query: 181 tatgttcatgtgcatggcaatcacctgtggaaccttattcaattaatactgaacaaagat 240
            |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct: 381 aatgttcatgtgcatggcaatcacctggggaaccttattcaattaatacagaacaaagat 440

               
Query: 241 actg 244
           ||||
Sbjct: 441 actg 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no410_h14.g1 MSMg01no410_h14.g1 CHROMAT_FILE:
MSMg01no410_h14.g1 PHD_FILE: MSMg01no410_h14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:13 2005
         (428 letters)



>mm_chr11_47868019_47868846
          Length = 828

 Score =  804 bits (416), Expect = 0.0
 Identities = 425/428 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctggtcctcctgtttctacttcttaactcccaggactacacgcacatgcccacaaactgg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 628 ctggtcctcctgtttctacttcttaactcccaggactacacgcacatgcccacacactgg 569

                                                                       
Query: 61  cttttaggtcttatgttcttatgactgacatcaatagcccagaacagcttctatgtaagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 cttttaggtcttatgttcttatgactgacatcaatagcccagaacagcttctatgtaagt 509

                                                                       
Query: 121 gcctatagtcactaaagatctataagtgacagagcttggtccctgattgagcatgtctga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 gcctatagtcactaaagatctataagtgacagagcttggtccctgattgagcatgtctga 449

                                                                       
Query: 181 tcccttaaggtaatagaggagctttgtctgaatcttctaatctttgtcaactgccttgga 240
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 tcccttaaggtagtagaggagctttgtctgaatcttctaatctttgtcaactgccttgga 389

                                                                       
Query: 241 ggtctgccgtcccagtctttctcagctggcaaattcccctgcacctgtaagctacctgct 300
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 ggcctgccgtcccagtctttctcagctggcaaattcccctgcacctgtaagctacctgct 329

                                                                       
Query: 301 atagcattgctccaggaaacagcagagtgggtcaattcctgagctcttctatctcctaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 atagcattgctccaggaaacagcagagtgggtcaattcctgagctcttctatctcctaat 269

                                                                       
Query: 361 caactctaatagccctgtctacttgccacttgaggatggtgttaaatagaacttcctggt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 caactctaatagccctgtctacttgccacttgaggatggtgttaaatagaacttcctggt 209

                   
Query: 421 gagtatgc 428
           ||||||||
Sbjct: 208 gagtatgc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 828
Length adjustment: 9
Effective length of query: 419
Effective length of database: 819
Effective search space:   343161
Effective search space used:   343161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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